Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0011 ATGGGTCATAGTAGAGCTGTGAAATTTGGTTCAGAGGATGTCAATAAGTTGGTGAACGAGATGCCAAGCTTTGTTTCACAGATGCCCTCTTCTAATCCCATTGGTGCAGAGGGAAACACTGTTCCTTCTTCTCGAGTTTCAAACTTCAGAGATCTTGAGCAATCTCTTGGCTTTCGTATAGAGGATGCTGTTGATATTACAAGAAATCCTCTGTATAATCAGATGAAATCAAACAGCCAGGCACAAGGTACCGACATTCAATTTGGTGCTTTTAATAAGTCGCTTGCATCATCTGATATAAACATATCTGCTGCGATTATGGGGTCTCAGGCATTGGCCCCACAAAGAGAAGCTCAACCCAATCTTGCATCTGCATCTGGTGGTCATAGGGAAAACTGGGGAGAGTCAAATATGGCTGATGGAAGTCCAATGACTGATGATACTTCAGATGATGACACAGATGACAAAAATCAAAGGCTGGAAGGAAATAATCAAATGATGGTTGCTGCAGGCTCTGATTCCAGCAACAAATCAAAGGAGAAATCAGGGGATCAAAAGACCTTACGCAGGCTTGCACAAAACCGTGAAGCTGCAAGAAAGAGCCGATTGAGGAAAAAAGCATATGTACAACAGCTAGAAAGCAGCCGATTGAAGCTGACGCAACTTGAGCAGGAGCTCCAACGGGCCCGCCAGCAGGGAATATTCATATCAAGCTCCGGAGATCAGACCCATTCAATGAGTGGCAATGGTGCATTAGCGTTCGATGTAGAATATACTCGGTGGCTAGAAGAGCATAATAGACAGATAAATGAGCTTAGAGCGGCAGTTAATTCACATGCAGGTGACACGGAGCTTCGGACCATTGTAGACAATGTCACAGCTCAGTTTGATGATATTTTCAGGGTGAAGAGCACTGCTGCTAAAGCTGATGTCTTCCATATCTTGTCTGGAATGTGGAAGACACCAGCTGAACGCTGTTTTATGTGGATCGGCGGCTTCCGATCTTCTGAGCTACTCAAGCTTCTGATGAACCAGTTGGAGCCTTTAACCGAGCAACAAATCACAGGAATATGCAACTTGCAACAATCGTCCCAGCAAGCCGAAGATGCTCTATCCCAAGGAATGGAAGCATTGCAGCAATCTTTGGCTGAGACATTGGCAAATGGCCCTGCTGCAACATCCGGGTCCAAAGAAAATGTAGCCAACTATATGGGCCAAATGGCCATGGCTATGGGTAAACTAGGCACTCTCGAGGGCTTCCTACGCCAGGCTGATAATCTTAGACAACAAACATTACAACAGATGCATCGCATATTGACAACCAGACAATCTGCCCGAGCACTTCTTGCAATAAATGACTACTTTTCCCGTCTTAGAGCTCTTAGTTCTCTTTGGCTTGCCCGACCAAGAGAATGA 1416 45.2 MGHSRAVKFGSEDVNKLVNEMPSFVSQMPSSNPIGAEGNTVPSSRVSNFRDLEQSLGFRIEDAVDITRNPLYNQMKSNSQAQGTDIQFGAFNKSLASSDINISAAIMGSQALAPQREAQPNLASASGGHRENWGESNMADGSPMTDDTSDDDTDDKNQRLEGNNQMMVAAGSDSSNKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGALAFDVEYTRWLEEHNRQINELRAAVNSHAGDTELRTIVDNVTAQFDDIFRVKSTAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLMNQLEPLTEQQITGICNLQQSSQQAEDALSQGMEALQQSLAETLANGPAATSGSKENVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 113492 119184 - Conep10aG0001100.1 Cone10ag0011 445809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0011 471 ProSiteProfiles DOG1 domain profile. 251 468 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone10ag0011 471 MobiDBLite consensus disorder prediction 160 176 - -
Cone10ag0011 471 CDD bZIP_HBP1b-like 186 238 - -
Cone10ag0011 471 Coils Coil 262 282 - -
Cone10ag0011 471 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 184 228 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0011 471 MobiDBLite consensus disorder prediction 115 189 - -
Cone10ag0011 471 PANTHER TRANSCRIPTION FACTOR TGA9 145 471 - -
Cone10ag0011 471 Coils Coil 205 232 - -
Cone10ag0011 471 Gene3D - 185 237 - -
Cone10ag0011 471 SUPERFAMILY Leucine zipper domain 186 229 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0011 471 SMART brlzneu 182 245 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0011 471 FunFam BZIP family transcription factor 185 234 - -
Cone10ag0011 471 Pfam Seed dormancy control 268 343 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone10ag0011 471 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 189 204 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0011 471 Pfam bZIP transcription factor 186 226 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0011 Cone-Chr10:113492 Cone5ag0986 Cone-Chr5:4227304 2.96E-168 dispersed
Cone10ag0011 Cone-Chr10:113492 Cone3ag0017 Cone-Chr3:109811 6.85E-276 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44140 PF00204 DNA_gyraseB 6.80E-55 CL0329 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0011 K14431 - csv:101219149 699.508