Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0044 ATGGTGGCGGACGCTGATACCGGGGGACTATCGAAGCATAAGGGAAATCAGGTCTGCCAGATCTGCAGCGACACCATCGGAACCTCCGTGGACGGCGCCGAACCCTTTGTTGCTTGCGACGTATGTGCGTTTCCCGTTTGCAGGCCCTGCTACGAATACGAGAGGAAAGATGGGACTCAGTCTTGTCCTCAGTGCAAGACTAAGTACAAATGGCATAAAGGAAGCCCTACTGTAATTGGGGAAGAAGTGGAGGATTCTGGTGTACAAGAGCGGAAGAATAAGCTGCCAGAGCGGACTCTTAGTTGGGACACGAATTATGATAAAGAGGGATCACTTAATCATATTCCTTTGCTTACTACTGGGCGTTCTGTTTCTGGGGAGCTTTCTGCTGCATCTCCAGAAAGGCTCTCCATGGCATCTCCTGAAAGTGGGAGCAGGGCTAATTATAGAATGATAGATCCAGCTAATGGATCGTCTGGATTTGGGAATGTGGCTTGGAAAGAGAGAATTGATGGTTGGAAGGTGAAGCAGGAGAAGAGTATTCCTCCTATGAGTGTTAGTCATGCCCCTTCCGAAGGTAGGGGAGGTGCAGATTTTGATGCCAGCACTGATGTCCTTATTGATGATTCTCTATTAAATGATGAAGCTCGCCAGCCTTTATCAAGGAAGGTTTCAATCCCATCATCTAGGATTAACCCTTATAGGCTTGTCATAGTTCTACGGCTTATTGTTCTTTGCATCTTCTTGCACTACCGTATAACAAATCCAGTTCCCAATGCCTATGCTTTGTGGTTAATCTCTGTGATCTGTGAGATTTGGTTTGCAATATCATGGATATTGGATCAGTTCCCTAAATGGCTCCCTGTGAATCGTGAGACTTATCTTGATCGGCTTGCTCTAAGATATGATCGAGAAGGAGAGCCATCCCAGTTGGCTGCGGTTGACATTTTTGTCAGTACAGTGGATCCTTTGAAGGAGCCTCCACTGGTTACTGCGAATACTGTCCTGTCTATTCTCGCTGTAGATTACCCAGTGGACAAAGTTTCTTGCTATGTCTCGGATGATGGAGCTGCTATGTTGACATTTGAAGCTTTGTCTGAAACATCGGAGTTTGCTAGAAAATGGGTTCCATTTTGCAAGAAATACTGCATTGAACCACGAGCTCCAGAATGGTACTTTGCACAGAAGATTGATTACTTGAAAGACAAGGTTCAGCCATCATTTGTAAAAGACCGGAGAGCAATGAAGAGAGAATACGAAGAATTTAAGGTTCGTGTTAATGGGCTTGTTGCAAAGGCACAGAAGATTCCTGATGAAGGATGGCTGATGCAAGATGGTACTCCTTGGCCAGGAAATAACACCAGAGATCATCCTGGAATGATCCAGGTTTTCTTAGGGCAGAGCGGAGGACTCGACAGTGAGGGCAATGAGCTTCCACGACTGGTTTATGTTTCTCGAGAAAAGCGTCCTGGCTTCCAACACCACAAGAAGGCTGGTGCTATGAATGCACTTGTGCGCGTATCAGCTGTTCTTACCAATGGGCCTTTCTTGTTGAATCTTGATTGTGATCATTACATAAACAACAGCAAGGCATTGAGGGAAGCCATGTGCTTTCTAATGGACCCTAACCTCGGAAAATCAGTTTGTTATGTTCAGTTTCCACAGAGATTTGATGGTATTGATAGGAGCGATCGATATGCTAACCGTAACACTGTTTTCTTTGATATCAATTTAAGAGGATTGGATGGCATCCAAGGTCCAGTTTATGTGGGAACTGGATGTGTTTTCAACCGAACTGCCTTGTATGGCTATGAACCTCCTATCAAGCCTAAGCATAAGGTGCCAGGACTATTATCCTTGTGCTTTGGTGGGTCAAGAAAAAAGAGTTCCAAATCAGGTAGAAAGGAGTCTGATAAGAAGAAATCAAGCAAGCATGTGGACCCCACTGTGCCAATATTCAACTTGGAGGATATTGAAGAAGGAGTTGAGGGTCATGGATTTGATGATGAAAAGTCTCTGCTTATGTCACAAATGAGCCTGGAGAAGAGGTTCGGTCAATCCGCAGTCTTTGTTGCTTCGACACTAATGGAGAATGGTGGTGTTCCTCATTCTGCCACTCCAGAATCTCTCCTCAAAGAAGCCATCCACGTCATTAGTTGTGGATACGAGGATAAAACTGATTGGGGAAATGAAATTGGATGGATCTATGGTTCTGTCACAGAGGATATTTTAACAGGGTTCAAAATGCATGCCCGTGGTTGGAGATCGATTTACTGCATGCCTCCCCGCCCTGCATTTAAAGGATCTGCTCCTATCAATCTTTCTGATCGTCTAAATCAAGTGCTTAGGTGGGCTTTAGGTTCAGTTGAAATTCTTCTGAGTCGGCATTGCCCCATATGGTATGGTTACAGTGGAAGACTTAAATGGCTAGAGAGATTTGCTTATATCAATACCACCATTTACCCAATTACAGCCATTCCACTTCTTGCCTATTGTACCTTACCCGCAATTTGTCTCCTCACAGGAAAGTTCATTATTCCACAGATTAGTAACCTTGCCAGTGTCTGGTTCATATCCCTCTTTCTTTCCATCTTTGCCACGGGTATCTTGGAAATGAGGTGGAGTGGTGTAGGAATCGATGAATGGTGGAGAAATGAGCAGTTTTGGGTCATAGGAGGTGTGTCGGCCCATCTATTTGCCGTCTTTCAAGGCCTGCTTAAAGTCCTTGCTGGTATTGACACCAATTTCACTGTCACTTCCAAAGCATCTGATGAAGATGGAGATTTTGCCGAACTCTATTTATTCAAATGGACAACCCTTTTGATCCCACCCACCACTCTTTTAATCATTAACTTGGTAGGAGTTGTTGCTGGGATTTCTTATGCTGTTAACAGTGGGTATCAATCATGGGGCCCACTTTTCGGGAAGCTGTTTTTCGCCTTCTGGGTTATTGTTCATCTCTATCCCTTCCTTAAGGGTCTTATGGGTCGACAAAACAGAACGCCCACAATTGTTGTTGTCTGGTCTGTTCTGCTTGCTTCTATCTTTTCCTTGTTGTGGGTTCGGATTGATCCTTTTACAACCCGAGTAACTGGGCCCGATGTTGAAGTGTGTGGAATCAACTGCTAA 3129 44.65 MVADADTGGLSKHKGNQVCQICSDTIGTSVDGAEPFVACDVCAFPVCRPCYEYERKDGTQSCPQCKTKYKWHKGSPTVIGEEVEDSGVQERKNKLPERTLSWDTNYDKEGSLNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRMIDPANGSSGFGNVAWKERIDGWKVKQEKSIPPMSVSHAPSEGRGGADFDASTDVLIDDSLLNDEARQPLSRKVSIPSSRINPYRLVIVLRLIVLCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYCIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRVNGLVAKAQKIPDEGWLMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRSDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKVPGLLSLCFGGSRKKSSKSGRKESDKKKSSKHVDPTVPIFNLEDIEEGVEGHGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPHSATPESLLKEAIHVISCGYEDKTDWGNEIGWIYGSVTEDILTGFKMHARGWRSIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLKWLERFAYINTTIYPITAIPLLAYCTLPAICLLTGKFIIPQISNLASVWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIINLVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTRVTGPDVEVCGINC 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 281158 286222 + Conep10aG0004400.1 Cone10ag0044 445842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0044 1042 SUPERFAMILY Nucleotide-diphospho-sugar transferases 328 852 IPR029044 -
Cone10ag0044 1042 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 451 605 IPR029044 -
Cone10ag0044 1042 FunFam Cellulose synthase 431 605 - -
Cone10ag0044 1042 CDD mRING-HC-C4C4_CesA 17 68 - -
Cone10ag0044 1042 MobiDBLite consensus disorder prediction 629 646 - -
Cone10ag0044 1042 Pfam Zinc-binding RING-finger 12 85 IPR027934 -
Cone10ag0044 1042 SUPERFAMILY RING/U-box 11 85 - -
Cone10ag0044 1042 ProSiteProfiles Zinc finger RING-type profile. 19 66 IPR001841 -
Cone10ag0044 1042 Pfam Cellulose synthase 314 1036 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone10ag0044 1042 MobiDBLite consensus disorder prediction 625 647 - -
Cone10ag0044 1042 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 220 1011 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone10ag0044 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 93 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0044 Cone-Chr10:281158 Cone17ag0346 Cone-Chr17:1624001 0 dispersed
Cone10ag0044 Cone-Chr10:281158 Cone3ag0058 Cone-Chr3:348716 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0044 K10999 - csv:101211779 1955.26