Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone10ag0048 | ATGGGATCTTTTTGCTTCTACATTTTTCTTATTGAGCTCTTATTGATGCTGGAGTCGCAGATTTTAAATGCTCAGCTTCATGATCAAACTACTCTGTCCGCCATTAACAAAGAGCTTGTTGTTCCAGGGTGGGGCCTCAATTCCTCAGACTACTGTTCATGGCCTGGAATTCACTGTAACTCGAACCATTCGAGGGTCGAAAAACTCGACCTCTCTCGCAAAGAGTTAAGAGGTAATATCACTTTAATTTCTGAGCTCACAGCTTTAAAGTGGCTTGACCTCTCCAACAACGATTTCTATGGGGCAATTCCTTCAGCTTTTGGCAACTTATCTGAGCTTGAGTTCATTGATTTGTCTGTTAATAAGTTTGAAGGCTCAATCCCACTTGAATTGGGTGGTCTTAAAATCCTTAGATCTTTGAACCTTTCCAATAATTTTCTTTCTGGGGAAATACCTAATGAACTTCAAGGCTTGGTCAATTTGAAGGAATTTCAAATTTCAAGTAATAGATTGAACGGTTCGATTCCGGCTTGGGTTGGGAATTTGACAAATCTAAGAGTTTTTACAGCTTATGAGAATGAATTTGGCGGGGATATTCCGGATAATTTAGGCTCGGTTTCTGAGCTTAAGATTTTGAATCTCCATTCTAATGAACTGGAAGGTGAGATACCTAAGAGCATTTTCGCTTTAGGCAAGCTTGAAGTTTTGATTCTGACCCTGAACAGATTGACCGGAAATCTTCCCGAAGAAATTGGAAACTGCAAAGGCCTTTCAAATGTTCGAATTGGGAACAATAATCTTATTGGTAACATTCCAAGTTCGATAGGAAATGTTAGTAGCCTTACTTATTTTGAAGTGGACAATAACAATTTTTCAGGGGAAATAGTCTCGCAATTTGCTGATTGTTTGAATCTCACCCTTCTGAATTTAGCCTCAAATGGGTTTACCGGAAAAATCCCAATTGAGCTTGGAGAGTTAATGAATTTGCAGGAGCTGATTCTTTCAAGCAACAGCCTGTTTGGAGATATTCCAAGATCGGTTCTTGAATGTAAGAATCTTAACAAACTTGATCTAAGTAATAACAAGTTCAATGGTAGTATTCCAACTGAAATTTGTAACTTGCCTAGGCTGCAATACTTGCTACTGGATAAGAATTCGATCGAAGGAGAAATCCCACATGAGATTGGAAAATGCGTGAAGCTTCTAGAACTTCAATTGGGTAGCAACTACTTAACCGGAACTATTCCTTCTGAAATTGGTCATATCAAGAATTTACAAATAGCTTTGAACTTGAGCTTCAATCATTTACGTGGATCATTGCCTCCTGATTTGGGGAAACTTGACAAGCTGGTTTCTTTAGATGTTGCTAATAATCGTCTTTCGGGTAATATCCCCTCTGAGCTAAAGGGCATGTTGAGCTTGATAGAGGTTAATTTCTCCAGCAATCTCTTAACGGGTCCCATCCCAGCTTTTGCCCCGTTCCAAAAGAGCTCAAATTTGAGCTTTGTAGGAAACAAAGGACTCTGCGGAGGGCCGTTAAGCATTTCTTGTGGAAATTCTAACGGGCCATATAATTCCCATCACAGGGTTTCTTATAGGATCATACTAGCCGTTATTGGGTCTGGTTTGGCCGTTTTTGCATCAGTCAGTATTATCGTCATGCTTTTTATGATGCGAGAAAGGCAAGAGAAAGAAGCCAAATCTTCCGGGATTGTAGAAGATGAAGCGAACAATAGTTCCCGGCCCACAATTATAGCCGGAAATGTATTTGTCGAAAATCTTAAACAAGCAATAGATCTCGATGCTGTCGTTAAAGCCACTTTGAAGGATTCAAACAAGCTCAATTTCGGAACTTTTAGTACGGTTTATAAAGCTGTTATGCCTTCTGGAATGATTCTATCAGTGAAGAGATTGAAGTCTATGGACCGGACTATTGTTCATCATCAAAGCAAGATGATAAGAGAGTTAGAAAGACTAAGCAAGTTATGTCATGAGAATCTTGTTCGGCCCATTGGGTTTGTTATTTACGAGGATGTTGCTTTGTTACTTCATGATTATTTGCCCAATGGGACTTTAGCCCAGCTTCTGCACGAAACTACGAAGAAGCCTGAATATGAGCCCAATTGGCCCACCCGGCTTAACATCGCCATTGGAGTTGCAGAAGGGTTGGCTTTCCTTCATCACGTGGCTGTGATTCATCTAGACATCTCATCTGCAAATGTTCTTCTAGATTCTAACTTCAAGCCGTTAGTTGGCGAAATTGAGATATCAAAGCTTTTGGATCCATCCAAAGGAACGGCAAGTATAAGTGCAGTCGCTGGTTCGTTCGGCTATATTCCCCCAGAATATGCATATACAATGCAAGTGACGGCACCTGGAAATGTGTATAGCTATGGGGTGGTCTTGCTAGAGATTCTTACAACAAGATTACCAGTTGAAGAGGAGTTCGGAGAGGGGGTGGATTTGGTGAAGTGGGTCCATACTGCTTCGGTGAGAGGGGAAACGCCAGAGCAGATCCTTGATGCTCGGCTTAGCACGGTTTCTTTTGGCTGGAGGAAAGAGATGCTTTCAGCTTTAAAAGTTGCGTTGCTCTGCACTGATAATATTCCGGCCAAACGGCCGAAAATGAAGAAGGTTGTGGAAATGCTTCAAGAAATCAGGCAATGCTGA | 2670 | 41.05 | MGSFCFYIFLIELLLMLESQILNAQLHDQTTLSAINKELVVPGWGLNSSDYCSWPGIHCNSNHSRVEKLDLSRKELRGNITLISELTALKWLDLSNNDFYGAIPSAFGNLSELEFIDLSVNKFEGSIPLELGGLKILRSLNLSNNFLSGEIPNELQGLVNLKEFQISSNRLNGSIPAWVGNLTNLRVFTAYENEFGGDIPDNLGSVSELKILNLHSNELEGEIPKSIFALGKLEVLILTLNRLTGNLPEEIGNCKGLSNVRIGNNNLIGNIPSSIGNVSSLTYFEVDNNNFSGEIVSQFADCLNLTLLNLASNGFTGKIPIELGELMNLQELILSSNSLFGDIPRSVLECKNLNKLDLSNNKFNGSIPTEICNLPRLQYLLLDKNSIEGEIPHEIGKCVKLLELQLGSNYLTGTIPSEIGHIKNLQIALNLSFNHLRGSLPPDLGKLDKLVSLDVANNRLSGNIPSELKGMLSLIEVNFSSNLLTGPIPAFAPFQKSSNLSFVGNKGLCGGPLSISCGNSNGPYNSHHRVSYRIILAVIGSGLAVFASVSIIVMLFMMRERQEKEAKSSGIVEDEANNSSRPTIIAGNVFVENLKQAIDLDAVVKATLKDSNKLNFGTFSTVYKAVMPSGMILSVKRLKSMDRTIVHHQSKMIRELERLSKLCHENLVRPIGFVIYEDVALLLHDYLPNGTLAQLLHETTKKPEYEPNWPTRLNIAIGVAEGLAFLHHVAVIHLDISSANVLLDSNFKPLVGEIEISKLLDPSKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVEEEFGEGVDLVKWVHTASVRGETPEQILDARLSTVSFGWRKEMLSALKVALLCTDNIPAKRPKMKKVVEMLQEIRQC | 889 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 294578 | 297807 | - | Conep10aG0004800.1 | Cone10ag0048 | 445846 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone10ag0048 | 889 | CDD | STKc_IRAK | 617 | 886 | - | - | |
| Cone10ag0048 | 889 | SMART | LRR_typ_2 | 447 | 470 | IPR003591 | - | |
| Cone10ag0048 | 889 | SMART | LRR_typ_2 | 86 | 109 | IPR003591 | - | |
| Cone10ag0048 | 889 | SMART | LRR_typ_2 | 206 | 230 | IPR003591 | - | |
| Cone10ag0048 | 889 | SMART | LRR_typ_2 | 158 | 182 | IPR003591 | - | |
| Cone10ag0048 | 889 | SMART | LRR_typ_2 | 374 | 398 | IPR003591 | - | |
| Cone10ag0048 | 889 | SMART | LRR_typ_2 | 134 | 157 | IPR003591 | - | |
| Cone10ag0048 | 889 | SMART | LRR_typ_2 | 326 | 350 | IPR003591 | - | |
| Cone10ag0048 | 889 | FunFam | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 | 578 | 686 | - | - | |
| Cone10ag0048 | 889 | FunFam | Leucine-rich repeat receptor-like protein kinase | 26 | 177 | - | - | |
| Cone10ag0048 | 889 | Gene3D | Transferase(Phosphotransferase) domain 1 | 687 | 889 | - | - | |
| Cone10ag0048 | 889 | Pfam | Leucine Rich Repeat | 232 | 254 | IPR001611 | GO:0005515(InterPro) | |
| Cone10ag0048 | 889 | Pfam | Leucine Rich Repeat | 429 | 447 | IPR001611 | GO:0005515(InterPro) | |
| Cone10ag0048 | 889 | Pfam | Leucine Rich Repeat | 160 | 182 | IPR001611 | GO:0005515(InterPro) | |
| Cone10ag0048 | 889 | Pfam | Leucine Rich Repeat | 449 | 471 | IPR001611 | GO:0005515(InterPro) | |
| Cone10ag0048 | 889 | Pfam | Leucine Rich Repeat | 209 | 228 | IPR001611 | GO:0005515(InterPro) | |
| Cone10ag0048 | 889 | Pfam | Leucine Rich Repeat | 304 | 326 | IPR001611 | GO:0005515(InterPro) | |
| Cone10ag0048 | 889 | SUPERFAMILY | L domain-like | 302 | 512 | - | - | |
| Cone10ag0048 | 889 | Gene3D | Ribonuclease Inhibitor | 18 | 169 | IPR032675 | - | |
| Cone10ag0048 | 889 | Gene3D | Ribonuclease Inhibitor | 170 | 230 | IPR032675 | - | |
| Cone10ag0048 | 889 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 228 | 521 | - | - | |
| Cone10ag0048 | 889 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 731 | 743 | IPR008266 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cone10ag0048 | 889 | Pfam | Protein kinase domain | 611 | 880 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone10ag0048 | 889 | SUPERFAMILY | L domain-like | 46 | 363 | - | - | |
| Cone10ag0048 | 889 | Gene3D | Ribonuclease Inhibitor | 231 | 521 | IPR032675 | - | |
| Cone10ag0048 | 889 | Gene3D | Phosphorylase Kinase; domain 1 | 571 | 686 | - | - | |
| Cone10ag0048 | 889 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 403 | 880 | IPR052592 | - | |
| Cone10ag0048 | 889 | Pfam | Leucine rich repeat | 88 | 145 | IPR001611 | GO:0005515(InterPro) | |
| Cone10ag0048 | 889 | Pfam | Leucine rich repeat | 328 | 387 | IPR001611 | GO:0005515(InterPro) | |
| Cone10ag0048 | 889 | ProSiteProfiles | Protein kinase domain profile. | 608 | 886 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone10ag0048 | 889 | FunFam | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 | 687 | 889 | - | - | |
| Cone10ag0048 | 889 | SUPERFAMILY | Protein kinase-like (PK-like) | 608 | 886 | IPR011009 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0048 | Cone-Chr10:294578 | Cone14ag0207 | Cone-Chr14:950468 | 1.58E-65 | dispersed | |
| Cone10ag0048 | Cone-Chr10:294578 | Cone3ag0061 | Cone-Chr3:361209 | 3.41e-318 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 81790 | PF03385 | STELLO | 1.70E-09 | CL0110 | Cone | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone10ag0048 | - | - | - | 0.0 |