Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0050 ATGAAAGACTTGACTACTGAAACTGATGATTCATTCTTCAGTTTACTCGAACTTGCTGCTAATAACGACATCGAGGGATTCAAAAGATTGAATGGCCGCAATCCTTCTGGTATTGATGAGATTGGTCTTTGGTATGGCCGTAAGAAAGGCTCAAAGCAGATGGTTTATGAGTATAGAGCACCATTAATGGTCGCTTCTACTTATGGCAGTATTGATGTTATGAAGCTGATACTTTCTCAAACCGGTGTTGATATAAATCGTAGAGTTGGTCTTGACAAATGCACTGCCCTTCACTGTGCTGCTTCTGGTGGGGCCGCGAATGCAGTTGAGGTCGTGAAACTGCTTTTAGAATCCGGTGCTGATCCAAGTTTAGTGGATGCTAATGGTCACTTTCCTGTTGACAACATTGTTGTTCATCCAAGATTTAAAGATGTCAAATTGACCCTAGTAGAACTCCTAGCAATAGATTGTCCTGTTAACGAGAAAATCCCGGGTTTTTCTTATTCTCCTCCTACACCATCTTCTCCTGATGCTTTGGATTTGGTTTATTCACCAACAGGATCCAAATTCAATGATTTCCCCATCTATTCTTCATCAGAGAAGAAGGAATACCCTCTTGATCCATCTCTACCTGATATTAGGAACAACATATACTCAACCGATGAATTTAGAATGTATTCATTCAAGGTGAGACCTTGTTCTAGGGCCTATTCCCATGATTGGACTGAATGCCCATTTGTCCATCCTGGTGAAAATGCACGGAGAAGGGATCCAAGGAAGTCCCATTACAGCTGTTTTCCTTGTCCAGATTTCCGGAGAGGTACTTGTAGGCGAGGAGATATGTGTGAATATGCCCATGGAGTTTTTGAATCTTGGCTACACCCGGCTCAGTACAGAACCCGTCTTTGCAAGGACGGCACTAGTTGTTTTAGGAGGGTCTGCTTTTTCGCCCATACTCCAGAGGAGCTACGCCCTTTATATACCTCTACTGGATCTGTTGTAGTTTCTCCTCGTTCAGGTTCTTCTGGAACAGCTACTAAGGATTATGCAGCTGCTATGAACCATCTCTTACCCAATTCTCCATCTTCATTCACTCCTCGCATGTCTCAGTCTGCAAATAATGGCATGTCACAACACTCTCCAATAGCTTGGCCCCAACAGAATAATGTTCCTTCTTTGCATCTTCCTGGAAGCACGCTTCAGTGGAGCCGTTTAAGATCTTCCCTAAATGCGAGAGACATTCCGTTTGAAGATTTTGATTTGCTAAGGGATTTTGATGCTAAACAGCAGCAGCTTCTAAATGAATTCTCATGTCTGTCTTGTCCTTTGCTTTCTAATTCTTTGAACCGTTCTGGCCGGTTAAAAACCATGACCCCTTCAAATGATCTCTTTTCTAGGGAGAAGAACAGTGAGAGTTCTTCTCCTCGATACTCTGATCAGGCATTGGTTTCTGCTGTGTTCTCTCCAACCCATAAATCAGCCGTTCTTAATCAATTTCAGCAGCAACAAAGTATACTGTCTCCAATCAACACAAATTTCTCTTCAAAAAATGTTGACCACCATCTATTACAGGCTTCTTTGGGGATTCAATCACCAGGAAGGATGTCTCCAAGAAATGGAGAACCTATTTCACCCAACAGTTCTAGGATGTCCATGCTAGCTCAGAGGGAAAAGCTTCAACAATTTCGGAGCCTTAGTTCGAGGGAGCTTGGTGGCACGTCTTCTTCTATAGTTGGATCTCCTATACATGATTCTTGGTCTAAATGTGGTTCTTCGAACAGAAATTCGGATTGGGCTGTTAACTCATTAGATGGCTTGGGCAGGCTACGTAGATCTTCTTCATTTGAGCTTGGGAACAATGGAGAAGAGCCCGATTTATCATGGGTTCAGTCACTTTTTAAAGAATTACCAAGCGAGATGAAAGAAAAGGTGGCTCCACCACCCATCTCGGTCAATCCAAGTACCATTTCTTCCGGGGAGTGTTTAGATGTGAAATCCCAAATGGAATCTAGTGATCATGCCATGTTAGGAGCATGGCTTGAGCAAATGCAGCTTGATCAGTTTGTAGCTCAGCACAATTTAGACCACTAG 2091 42.9 MKDLTTETDDSFFSLLELAANNDIEGFKRLNGRNPSGIDEIGLWYGRKKGSKQMVYEYRAPLMVASTYGSIDVMKLILSQTGVDINRRVGLDKCTALHCAASGGAANAVEVVKLLLESGADPSLVDANGHFPVDNIVVHPRFKDVKLTLVELLAIDCPVNEKIPGFSYSPPTPSSPDALDLVYSPTGSKFNDFPIYSSSEKKEYPLDPSLPDIRNNIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKSHYSCFPCPDFRRGTCRRGDMCEYAHGVFESWLHPAQYRTRLCKDGTSCFRRVCFFAHTPEELRPLYTSTGSVVVSPRSGSSGTATKDYAAAMNHLLPNSPSSFTPRMSQSANNGMSQHSPIAWPQQNNVPSLHLPGSTLQWSRLRSSLNARDIPFEDFDLLRDFDAKQQQLLNEFSCLSCPLLSNSLNRSGRLKTMTPSNDLFSREKNSESSSPRYSDQALVSAVFSPTHKSAVLNQFQQQQSILSPINTNFSSKNVDHHLLQASLGIQSPGRMSPRNGEPISPNSSRMSMLAQREKLQQFRSLSSRELGGTSSSIVGSPIHDSWSKCGSSNRNSDWAVNSLDGLGRLRRSSSFELGNNGEEPDLSWVQSLFKELPSEMKEKVAPPPISVNPSTISSGECLDVKSQMESSDHAMLGAWLEQMQLDQFVAQHNLDH 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 310015 315790 + Conep10aG0005000.1 Cone10ag0050 445848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0050 696 SUPERFAMILY Ankyrin repeat 20 162 IPR036770 -
Cone10ag0050 696 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cone10ag0050 696 SMART c3hfinal6 297 320 IPR000571 GO:0046872(InterPro)
Cone10ag0050 696 SMART c3hfinal6 262 288 IPR000571 GO:0046872(InterPro)
Cone10ag0050 696 ProSiteProfiles Zinc finger C3H1-type profile. 267 289 IPR000571 GO:0046872(InterPro)
Cone10ag0050 696 Pfam Ankyrin repeats (3 copies) 52 125 IPR002110 GO:0005515(InterPro)
Cone10ag0050 696 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Cone10ag0050 696 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Cone10ag0050 696 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Cone10ag0050 696 PANTHER UNKEMPT FAMILY MEMBER 42 635 IPR045234 -
Cone10ag0050 696 FunFam Zinc finger CCCH domain-containing protein 66 220 288 - -
Cone10ag0050 696 Gene3D - 266 325 - -
Cone10ag0050 696 Gene3D - 6 146 IPR036770 -
Cone10ag0050 696 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 287 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0050 Cone-Chr10:310015 Cone18ag0358 Cone-Chr18:1739191 4.51E-271 dispersed
Cone10ag0050 Cone-Chr10:310015 Cone13ag0563 Cone-Chr13:5816285 0 wgd
Cone10ag0050 Cone-Chr10:310015 Cone19ag0515 Cone-Chr19:4239380 0 wgd
Cone10ag0050 Cone-Chr10:310015 Cone3ag0063 Cone-Chr3:379515 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44144 PF04862 DUF642 4.60E-15 CL0202 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0050 - - - 0.0