Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0051 ATGCAATTCCCATCATCTTCTTCAACTCAGTCTCTTAACCAATTTAGCTTCGAACAAAAGTACAGGAAAATCTGTGACCTTCTACTCCCTCTTACTCGCTCAAGATCACTTACTAAAGGTCTTCAACTCCATGCCCACGTTCTCAAATCTGGGTTACAATCCATCCCTCTCATATACCACCATCTTATCAACTTCTACTCAAAATTACAGCATCCCTTCTTCGCAAGCCAGGTTTTTGACGAAGCCCCGCATAAGTCTTCCACCACTTGGAGCTCTGTTATCTCCTCTTTTGCGCAAAATGAGCTCCCTTTACTCGCGCTTGAGTTCTTTCGGCGAATGCTTGAAAATGGGGTCCGTCCTGATGATCATATATACCCAAGTGCAACTAAGTCTTCTGCCATTCTGTCTAGATATGATATTGGTCAATCATTGCATTGCCTTGTGGTGAAAACTGGGTATGAATTTGATGTGTTTGTGTGTAGTTCAATGGTTGATATGTATGCAAAATGTGGTAAAATTGTAGATGCACGGCATGTGTTCGATGAGATGCCTGAAAGAAATGTGGTTTCTTGGAGTGGGATGATATATGGTTATGTTCAGATTGGTGAAGACGAGGAAGCTTTGAGGCTGTTCAAGCAAGCATTGCTTGAGAATTTGGACGTAAATGACTTCACTTTTTCAAGTGTGATTCGGGTTTGTGGAACTGCGACACTTCTTGAACTGGGTAAGCAAATCCATGGACTCTGTTTCAAAACAAGCTTTGATTCTTCAAGTTTTGTGGGTAGCTCTTTGATTTCCTTATATTCCAAATGTGGAGTGATAGAAGAAGCTTATATTGTATTCGATGAAATAGCCGTAAAAAATCTCGGAATGTGGAATTCAATGCTTATAGCTTGTGCCCAACATGCTCATACTGACAACACATTCAACCTGTTCAAACAATTGGAACTTTCCGGAATGAGACCAAATTTCATAACTTTTCTATGCATGCTTTACGCTTGTAGCCATGCAGGTTTAGTCGAAAAGGGCCGGTATTACTTTCAACAAATGAGGAAGTATGGAATTGAGCCCATGGCCCAGCATTATGCTTCTCTAGTGGACCTTCTTGGCCGAGCTGGAAAACTACAAGAGGCGGTTTCAATCATCAAGGAAATGCCAATGCAACCAACAGAATCTGTTTATAGCGCTTTACTGACCGGATGTAGAATCCATGGAAATACAGAATTAGCATCATTTGTAGCTGATAAAGTTATGGAATTAGGAAGTGTTCACTCTGGATTGCAAGTTTTATTATCCAATGCATATGCTTCGGCTGGAAGATATGAAGAAGCAGCCAAGGCCCGGAAATTACTAAGGGACAGAGGGGTGAAGAAGGAGACGGGTTTGAGCTGGATTGAAGAGGAGAATAGGATTCATACATTTACATCAGGGGATACTAGCCATTTATTGAGGGAAGAGATTTATAAGAAGTTGGAAGAGTTAGAGAGGGAGATGGAGAAAGAGGGTTATGTTCCGGATACAAGTTTTGTGCTTAGAGAAGTAGATGGCGAAGAGAAGAATCGATCGATTAAGTTTCATAGTGAAAGATTAGCTATTGCTTTTGCAATGATTATTTTCCCGCCAGAAAGGGTGATTAGGGTTATGAAGAACCTGAGGGTCTGTGGTGATTGTCATACGGCTATTAAGTTTATGTCCAAGTGTTCCGGAAGGGTGATAATCGTGAGGGATTATAACCGGTTTCATCGGTTTGAAGATGGGAAGTGCTCTTGCGGAGATTATTGGTGA 1785 41.29 MQFPSSSSTQSLNQFSFEQKYRKICDLLLPLTRSRSLTKGLQLHAHVLKSGLQSIPLIYHHLINFYSKLQHPFFASQVFDEAPHKSSTTWSSVISSFAQNELPLLALEFFRRMLENGVRPDDHIYPSATKSSAILSRYDIGQSLHCLVVKTGYEFDVFVCSSMVDMYAKCGKIVDARHVFDEMPERNVVSWSGMIYGYVQIGEDEEALRLFKQALLENLDVNDFTFSSVIRVCGTATLLELGKQIHGLCFKTSFDSSSFVGSSLISLYSKCGVIEEAYIVFDEIAVKNLGMWNSMLIACAQHAHTDNTFNLFKQLELSGMRPNFITFLCMLYACSHAGLVEKGRYYFQQMRKYGIEPMAQHYASLVDLLGRAGKLQEAVSIIKEMPMQPTESVYSALLTGCRIHGNTELASFVADKVMELGSVHSGLQVLLSNAYASAGRYEEAAKARKLLRDRGVKKETGLSWIEEENRIHTFTSGDTSHLLREEIYKKLEELEREMEKEGYVPDTSFVLREVDGEEKNRSIKFHSERLAIAFAMIIFPPERVIRVMKNLRVCGDCHTAIKFMSKCSGRVIIVRDYNRFHRFEDGKCSCGDYW 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 313503 315287 - Conep10aG0005100.1 Cone10ag0051 445849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0051 594 Gene3D Tetratricopeptide repeat domain 257 487 IPR011990 GO:0005515(InterPro)
Cone10ag0051 594 Gene3D Tetratricopeptide repeat domain 21 141 IPR011990 GO:0005515(InterPro)
Cone10ag0051 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cone10ag0051 594 Pfam E motif 404 466 IPR046848 -
Cone10ag0051 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cone10ag0051 594 Pfam DYW family of nucleic acid deaminases 502 594 IPR032867 GO:0008270(InterPro)
Cone10ag0051 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Cone10ag0051 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Cone10ag0051 594 NCBIfam pentatricopeptide repeat 89 121 IPR002885 -
Cone10ag0051 594 NCBIfam pentatricopeptide repeat 159 189 IPR002885 -
Cone10ag0051 594 NCBIfam pentatricopeptide repeat 325 357 IPR002885 -
Cone10ag0051 594 Gene3D Tetratricopeptide repeat domain 142 241 IPR011990 GO:0005515(InterPro)
Cone10ag0051 594 FunFam Pentatricopeptide repeat-containing protein At1g50270 142 248 - -
Cone10ag0051 594 Pfam PPR repeat 189 213 IPR002885 -
Cone10ag0051 594 Pfam PPR repeat 325 355 IPR002885 -
Cone10ag0051 594 Pfam PPR repeat 159 188 IPR002885 -
Cone10ag0051 594 Pfam PPR repeat 89 118 IPR002885 -
Cone10ag0051 594 Pfam PPR repeat 362 386 IPR002885 -
Cone10ag0051 594 Pfam PPR repeat 262 286 IPR002885 -
Cone10ag0051 594 Pfam PPR repeat 291 319 IPR002885 -
Cone10ag0051 594 FunFam Putative pentatricopeptide repeat-containing protein 19 139 - -
Cone10ag0051 594 PANTHER OS07G0578800 PROTEIN-RELATED 205 484 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone10ag0051 594 FunFam Putative pentatricopeptide repeat-containing protein 258 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0051 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0051 Cone-Chr10:313503 Cone9ag1171 Cone-Chr9:8352117 2.64E-161 dispersed
Cone18ag0701 Cone-Chr18:3771839 Cone10ag0051 Cone-Chr10:313503 2.27E-23 dispersed
Cone1ag0969 Cone-Chr1:54868090 Cone10ag0051 Cone-Chr10:313503 2.61E-32 dispersed
Cone10ag0051 Cone-Chr10:313503 Cone18ag0610 Cone-Chr18:3092707 7.08E-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g511 . . . . . Bpe14g01189 . . . . . Cma14g01709 . Car14g01544 . . . Bhi01g00809 . . . . . Lcy11g1547 . . . . . . . . Cone10ag0051 . . . . . Cme06g00608 Blo02g00537 . . Bda13g00119 . . Bma02g00845 . . . Cmo14g01753 . . . . . . . . . . . . . . . . . . . . . Csa03g01327 Chy06g00578 .