Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0055 ATGGCTGACTATCCCTACTCATCAAATTTCTACACAAGTCTTTTCAAATTCAACCCTATCCAGTACCAATATTACCCACATCAACCTAACCCCTCTTTACCACCACCACAGCCACTTCCTCCGCCCTACACTGAGGCCCATAACTTATTCTTCAATCCCCACCAGGCCCACCACCATGACCAGTACTCTTTTAGTAACAATAACTACCATCATCAAATTACTCCACCTCCTTCTCCTCCTCTCAGGCAAGCCCTCCCTCTTCTCAGACTCAGCCCTACGAGACAACAAAAAGAAGATCATGATCATCATAGCCATAACCAGCTAGAACAAGATCAAGAGGATGAATATGAAGAAGAGGAGGAGGATGGTGCGGGCAATTTGACAGTGGCACTGCACATAGGGTTGCCGAACCCTAGCGCCGCTGAGCTAGCATCTGTGCTGTCATGTGCTTCAGCTTCTTCGTCTGATCATCAGATCAGTAGTAATAACAAAGATCATACAAATGATGATGATTATGATGATGACTCTGGAGGGTATAATCACATGAAAAGGCTGAATAAGGGTCAGTATTGGATCCCTACTCCTTCTCAGATTCTCATTGGCCCCACTCAGTTTTCTTGCCCTGTTTGCTGCAAGACCTTCAATCGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGAATCATTAAGAGGAACACAACCGACCGGAATGCTGAGGCTTCCGTGCTACTGCTGCGCACCGGGATGTAGGAACAACATAGATCATCCGAGAGCAAAGCCGCTTAAAGATTTTAGGACACTTCAAACACATTACAAGAGAAAGCATGGGATCAAGCCCTTCATGTGCAGGAAATGTGGCAAGGCATTTGCAGTGAGGGGAGATTGGAGAACACATGAGAAGAATTGTGGCAAACTCTGGTATTGTATTTGCGGGACTGACTTTAAGCACAAGAGATCTCTTAAGGACCATATCAAAGCTTTTGGGAATGGCCATGCAGCTTATGGAATCGATAATCATGGATTCGATCAAGAAGAAGACGAGCCGGCTTCGGAAGTCGAACAAGACAATGAATCTATGCAGTTGTGA 1113 45.37 MADYPYSSNFYTSLFKFNPIQYQYYPHQPNPSLPPPQPLPPPYTEAHNLFFNPHQAHHHDQYSFSNNNYHHQITPPPSPPLRQALPLLRLSPTRQQKEDHDHHSHNQLEQDQEDEYEEEEEDGAGNLTVALHIGLPNPSAAELASVLSCASASSSDHQISSNNKDHTNDDDYDDDSGGYNHMKRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGTDFKHKRSLKDHIKAFGNGHAAYGIDNHGFDQEEDEPASEVEQDNESMQL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 333471 335799 + Conep10aG0005600.1 Cone10ag0055 445853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0055 370 Coils Coil 102 122 - -
Cone10ag0055 370 FunFam Zinc finger protein WIP2 258 340 - -
Cone10ag0055 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Cone10ag0055 370 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 288 312 - -
Cone10ag0055 370 MobiDBLite consensus disorder prediction 26 123 - -
Cone10ag0055 370 Gene3D Classic Zinc Finger 267 343 - -
Cone10ag0055 370 MobiDBLite consensus disorder prediction 28 43 - -
Cone10ag0055 370 MobiDBLite consensus disorder prediction 162 179 - -
Cone10ag0055 370 SMART c2h2final6 205 227 IPR013087 -
Cone10ag0055 370 SMART c2h2final6 289 309 IPR013087 -
Cone10ag0055 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 309 IPR013087 -
Cone10ag0055 370 MobiDBLite consensus disorder prediction 347 370 - -
Cone10ag0055 370 MobiDBLite consensus disorder prediction 58 72 - -
Cone10ag0055 370 PANTHER ZINC FINGER PROTEIN WIP2 55 367 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cone10ag0055 370 MobiDBLite consensus disorder prediction 155 179 - -
Cone10ag0055 370 SUPERFAMILY beta-beta-alpha zinc fingers 271 309 IPR036236 -
Cone10ag0055 370 MobiDBLite consensus disorder prediction 93 110 - -
Cone10ag0055 370 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Cone10ag0055 370 Gene3D Classic Zinc Finger 204 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0055 Cone-Chr10:333471 Cone6ag0465 Cone-Chr6:2295739 2.32E-107 dispersed
Cone10ag0055 Cone-Chr10:333471 Cone19ag0509 Cone-Chr19:4187739 6.78E-147 wgd
Cone10ag0055 Cone-Chr10:333471 Cone3ag0068 Cone-Chr3:407244 2.07E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44145 PF05691 Raffinose_syn 1.10E-267 CL0058 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0055 - - - 0.0