Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag0055 | ATGGCTGACTATCCCTACTCATCAAATTTCTACACAAGTCTTTTCAAATTCAACCCTATCCAGTACCAATATTACCCACATCAACCTAACCCCTCTTTACCACCACCACAGCCACTTCCTCCGCCCTACACTGAGGCCCATAACTTATTCTTCAATCCCCACCAGGCCCACCACCATGACCAGTACTCTTTTAGTAACAATAACTACCATCATCAAATTACTCCACCTCCTTCTCCTCCTCTCAGGCAAGCCCTCCCTCTTCTCAGACTCAGCCCTACGAGACAACAAAAAGAAGATCATGATCATCATAGCCATAACCAGCTAGAACAAGATCAAGAGGATGAATATGAAGAAGAGGAGGAGGATGGTGCGGGCAATTTGACAGTGGCACTGCACATAGGGTTGCCGAACCCTAGCGCCGCTGAGCTAGCATCTGTGCTGTCATGTGCTTCAGCTTCTTCGTCTGATCATCAGATCAGTAGTAATAACAAAGATCATACAAATGATGATGATTATGATGATGACTCTGGAGGGTATAATCACATGAAAAGGCTGAATAAGGGTCAGTATTGGATCCCTACTCCTTCTCAGATTCTCATTGGCCCCACTCAGTTTTCTTGCCCTGTTTGCTGCAAGACCTTCAATCGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGAATCATTAAGAGGAACACAACCGACCGGAATGCTGAGGCTTCCGTGCTACTGCTGCGCACCGGGATGTAGGAACAACATAGATCATCCGAGAGCAAAGCCGCTTAAAGATTTTAGGACACTTCAAACACATTACAAGAGAAAGCATGGGATCAAGCCCTTCATGTGCAGGAAATGTGGCAAGGCATTTGCAGTGAGGGGAGATTGGAGAACACATGAGAAGAATTGTGGCAAACTCTGGTATTGTATTTGCGGGACTGACTTTAAGCACAAGAGATCTCTTAAGGACCATATCAAAGCTTTTGGGAATGGCCATGCAGCTTATGGAATCGATAATCATGGATTCGATCAAGAAGAAGACGAGCCGGCTTCGGAAGTCGAACAAGACAATGAATCTATGCAGTTGTGA | 1113 | 45.37 | MADYPYSSNFYTSLFKFNPIQYQYYPHQPNPSLPPPQPLPPPYTEAHNLFFNPHQAHHHDQYSFSNNNYHHQITPPPSPPLRQALPLLRLSPTRQQKEDHDHHSHNQLEQDQEDEYEEEEEDGAGNLTVALHIGLPNPSAAELASVLSCASASSSDHQISSNNKDHTNDDDYDDDSGGYNHMKRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGTDFKHKRSLKDHIKAFGNGHAAYGIDNHGFDQEEDEPASEVEQDNESMQL | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 333471 | 335799 | + | Conep10aG0005600.1 | Cone10ag0055 | 445853 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag0055 | 370 | Coils | Coil | 102 | 122 | - | - | |
Cone10ag0055 | 370 | FunFam | Zinc finger protein WIP2 | 258 | 340 | - | - | |
Cone10ag0055 | 370 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 205 | 232 | IPR013087 | - | |
Cone10ag0055 | 370 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 288 | 312 | - | - | |
Cone10ag0055 | 370 | MobiDBLite | consensus disorder prediction | 26 | 123 | - | - | |
Cone10ag0055 | 370 | Gene3D | Classic Zinc Finger | 267 | 343 | - | - | |
Cone10ag0055 | 370 | MobiDBLite | consensus disorder prediction | 28 | 43 | - | - | |
Cone10ag0055 | 370 | MobiDBLite | consensus disorder prediction | 162 | 179 | - | - | |
Cone10ag0055 | 370 | SMART | c2h2final6 | 205 | 227 | IPR013087 | - | |
Cone10ag0055 | 370 | SMART | c2h2final6 | 289 | 309 | IPR013087 | - | |
Cone10ag0055 | 370 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 289 | 309 | IPR013087 | - | |
Cone10ag0055 | 370 | MobiDBLite | consensus disorder prediction | 347 | 370 | - | - | |
Cone10ag0055 | 370 | MobiDBLite | consensus disorder prediction | 58 | 72 | - | - | |
Cone10ag0055 | 370 | PANTHER | ZINC FINGER PROTEIN WIP2 | 55 | 367 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Cone10ag0055 | 370 | MobiDBLite | consensus disorder prediction | 155 | 179 | - | - | |
Cone10ag0055 | 370 | SUPERFAMILY | beta-beta-alpha zinc fingers | 271 | 309 | IPR036236 | - | |
Cone10ag0055 | 370 | MobiDBLite | consensus disorder prediction | 93 | 110 | - | - | |
Cone10ag0055 | 370 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 207 | 227 | IPR013087 | - | |
Cone10ag0055 | 370 | Gene3D | Classic Zinc Finger | 204 | 227 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0055 | Cone-Chr10:333471 | Cone6ag0465 | Cone-Chr6:2295739 | 2.32E-107 | dispersed | |
Cone10ag0055 | Cone-Chr10:333471 | Cone19ag0509 | Cone-Chr19:4187739 | 6.78E-147 | wgd | |
Cone10ag0055 | Cone-Chr10:333471 | Cone3ag0068 | Cone-Chr3:407244 | 2.07E-184 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44145 | PF05691 | Raffinose_syn | 1.10E-267 | CL0058 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag0055 | - | - | - | 0.0 |