Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0059 ATGGCTGCCAAACCCTCCATTATTGCTCCTCCATTCTTCCTCTCTCTTACAACCCTTTTCACCGTCTTCGTTCTCACTTCATCTTCATCCGAACCAGACATTCTTCTCACCTTCAAATCCTCCATTAAAGACCCAAACAACTTCCTCTCAACCTGGTCCAATACCTCATCCACCCACTATTGTAACTGGACCGGCATCACTTGCACCTCCGCCGCCGGCGGAGGTCCGCCCTCCATTACCTCACTCAACCTTCATAGCTCAAACCTTTCCGGCGAAATCTCATCCTCAATATGCCAACTTCCCAATTTAGCCCACCTCAATCTAGCTGACAACCTCTTCAACAAACCAATACCTCTTCACCTCTCACAATGCACATCCTTAGAAATCCTGAATCTTAGCAACAATCTCATCTGGGGAACAATCCCAGATCAAATATCCCAATTTGGGTACTTGAAAGTTCTGGACTTTAGCATGAACCATGTTGAAGGAAAAATCCCAGAAGCCATTGGCGAGTTGAAGAAGCTTCAAGTTCTCAAACTGGGAAGCAATTTGCTTTCAGGTAATTTACCCATCAATTTGTTTAAGAATCTGACTGAACTAAATGTTCTTGATTTGTCACAAAATGTGTACTTAGTGAGTGAGATTCCTAGTAATATAGGGAATCTTGATAAGCTAGAGAGATTGTTTCTACAAGGTTGTGGCTTTCATGGTGAGATTCCAGAATCTTTTTTGGGTTTGAAAAGCTTGAGAATGTTAGATCTTTCATTAAATGATCTAAGTGGGATTTTTCCTAAAAAGGCTATTGATTCTTCTCTTAAGAACTTGATCTCTTTTGATGTTTCACAAAACAAGCTTTTCGGGTCATTTCCCGATGGAATTTGTAATGGAAGGAAAGGGCTTATAAATCTAAGTCTGCATACCAATTTTTTCAATGGTTCTATACCCATTTCCTCCATTAAGGATTGCTTGAATCTTGAGAGGTTTCAAGTTCAAAACAATAAGTTTTATGGTGATTTTCCAAGTGGGTTATGGTCTTTACCCAAAATCAAGCTTATCAGAGCAGAAAACAATCGATTTTCTGGACAAATACCTGATTCAATATCAATGGCTGTTCAGCTGGAGCAAGTTCAAATAGATAATAATACCTTTAGCGGAAAATTACCCTTTGGCCTAGGATCAATCCATACCTTATACAGATTCTCTGCTTCACTTAACAACTTATTTGGTGAATTGCCTCCAAATTTTTGCGACTCTCCTTTGATGAGCATCATCAATCTCTCCCACAATTCTCTTTCTGGCCAAATCCCCGAGCCCAAAAAGTGTAAAAAGCTCGTTTCTTTAGCCTTGGCCAGTAACAATTTGACCGGACAAATCCCATTATCTCTTTCCGATTTACCGGTTTTAACTTACCTTGACCTTTCTGATAATAACCTTACTGGACCGATCCCTCAAGAACTTCAAAACTTAAAGCTTGCCCTCTTCAATGTTTCCTTTAATCAGTTATCTGGTAGAGTACCTTACTCTCTAATCTCTGATCTTCCCGCTTCATTTCTTCAAGGAAATCCTAATCTTTGTGGACAAGGATTAGGAAATTCTTGTTCAAATGACCTGCCTAAAAACCACCATCATGATGCTAATCTTACCATATTGATCTGTGCTATAATCTCAGTAGCTCTTGTTCTAGCAATTATGATTCTCGCAGGCGGGTTTATCATATACCAAAGATCCCATAAGAGAAAATTTGAAGATGGGAATTGGAATTCATTGTTCTTCTACCCTCTTCGAATCACGGAAAATGATTTGATAATGGGAATGGATGAGAAAAGTAGACAAGGCGAAAAAGTTGGAGTTTTTGGAGGAGTATATGCATTGAATCTACCGAGTGGTGAAATAGTTGCTGTAAAAAAACTCGTTAATTTCGGGAAGAAATGTTCGAAAAGCTTGAAGAGTGAGATCAAGACGTTAGCGAAGACCAGGCATCAGAACATTGTCAAGATTCTCGGGTTATGTCATTCGGAAGATTCCATCTTCTTGATATATGAATTCTTACCAAAGGGAAGTTTAGGGGACTTAATTTGTGGGGATGATTTTTGTTTAGATTGGTGTGTTAGATTGCGAATAGCAATCGGAGTAGCTCAAGGGCTAGCTTATCTTCATAAGGACCAGTCGGTTTCTCCGAGTATTCTTCACCGGAATGTCAAGTCAACAAATATTCTTTTGGATGAAGATCTTGTTCCGAAGATTGCTGATTTTGGTCTTGATCGTATCATAGGGGACTCCGCATTTCAGTCTACTTTGGCCTCGGAATCTTCTTTGTCATGTTACAACCCGCCAGAGCTTGGATACAGTAAAAGAGCTACTGAACAGATGGACGTTTATAGTTTTGGAGTTGTGTTGCTAGAGCTAGTAACGGGCCGGCAAGCAGAACGAGGAGATCCCCAAGAAGAAGGCTCTGTGGATATTCTCCAATGGGTGAGGCGAAAAGTCAACATAACGAATGGAACACTGCAAGTGGTTGACTCGAAGGTACCAAAATGTTACCAGAAAGAGATGTTGGAGGTTTTGGACATAGCTCTTCGGTGCACTTCCGTGGTCCCTCAAAAACGACCCTCCATGTCTGAAGTTGTGAAGGCACTTCAATCTTTTGGTTCATTAGACGACCATCGAGTTGATATCAGAGTATAG 2685 40.45 MAAKPSIIAPPFFLSLTTLFTVFVLTSSSSEPDILLTFKSSIKDPNNFLSTWSNTSSTHYCNWTGITCTSAAGGGPPSITSLNLHSSNLSGEISSSICQLPNLAHLNLADNLFNKPIPLHLSQCTSLEILNLSNNLIWGTIPDQISQFGYLKVLDFSMNHVEGKIPEAIGELKKLQVLKLGSNLLSGNLPINLFKNLTELNVLDLSQNVYLVSEIPSNIGNLDKLERLFLQGCGFHGEIPESFLGLKSLRMLDLSLNDLSGIFPKKAIDSSLKNLISFDVSQNKLFGSFPDGICNGRKGLINLSLHTNFFNGSIPISSIKDCLNLERFQVQNNKFYGDFPSGLWSLPKIKLIRAENNRFSGQIPDSISMAVQLEQVQIDNNTFSGKLPFGLGSIHTLYRFSASLNNLFGELPPNFCDSPLMSIINLSHNSLSGQIPEPKKCKKLVSLALASNNLTGQIPLSLSDLPVLTYLDLSDNNLTGPIPQELQNLKLALFNVSFNQLSGRVPYSLISDLPASFLQGNPNLCGQGLGNSCSNDLPKNHHHDANLTILICAIISVALVLAIMILAGGFIIYQRSHKRKFEDGNWNSLFFYPLRITENDLIMGMDEKSRQGEKVGVFGGVYALNLPSGEIVAVKKLVNFGKKCSKSLKSEIKTLAKTRHQNIVKILGLCHSEDSIFLIYEFLPKGSLGDLICGDDFCLDWCVRLRIAIGVAQGLAYLHKDQSVSPSILHRNVKSTNILLDEDLVPKIADFGLDRIIGDSAFQSTLASESSLSCYNPPELGYSKRATEQMDVYSFGVVLLELVTGRQAERGDPQEEGSVDILQWVRRKVNITNGTLQVVDSKVPKCYQKEMLEVLDIALRCTSVVPQKRPSMSEVVKALQSFGSLDDHRVDIRV 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 357003 359975 + Conep10aG0006000.1 Cone10ag0059 445857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0059 894 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 78 881 IPR050647 -
Cone10ag0059 894 Gene3D Ribonuclease Inhibitor 194 542 IPR032675 -
Cone10ag0059 894 Pfam Protein kinase domain 616 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0059 894 SMART LRR_typ_2 100 124 IPR003591 -
Cone10ag0059 894 SMART LRR_typ_2 246 270 IPR003591 -
Cone10ag0059 894 SMART LRR_typ_2 197 222 IPR003591 -
Cone10ag0059 894 SMART LRR_typ_2 465 488 IPR003591 -
Cone10ag0059 894 SMART LRR_typ_2 272 296 IPR003591 -
Cone10ag0059 894 SMART LRR_typ_2 172 196 IPR003591 -
Cone10ag0059 894 SMART LRR_typ_2 125 148 IPR003591 -
Cone10ag0059 894 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515(InterPro)
Cone10ag0059 894 Gene3D Transferase(Phosphotransferase) domain 1 684 891 - -
Cone10ag0059 894 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 270 536 - -
Cone10ag0059 894 SUPERFAMILY L domain-like 213 532 - -
Cone10ag0059 894 Gene3D Phosphorylase Kinase; domain 1 615 683 - -
Cone10ag0059 894 FunFam Leucine-rich repeat family protein 30 190 - -
Cone10ag0059 894 SUPERFAMILY Protein kinase-like (PK-like) 616 879 IPR011009 -
Cone10ag0059 894 Gene3D Ribonuclease Inhibitor 28 193 IPR032675 -
Cone10ag0059 894 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 596 682 - -
Cone10ag0059 894 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 683 886 - -
Cone10ag0059 894 SUPERFAMILY L domain-like 29 295 - -
Cone10ag0059 894 ProSiteProfiles Protein kinase domain profile. 607 883 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0059 894 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cone10ag0059 894 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515(InterPro)
Cone10ag0059 894 Pfam Leucine Rich Repeat 468 489 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0059 Cone-Chr10:357003 Cone6ag1494 Cone-Chr6:11836339 6.63E-59 dispersed
Cone10ag0059 Cone-Chr10:357003 Cone3ag0073 Cone-Chr3:429185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81792 PF03719 Ribosomal_S5_C 6.60E-24 CL0329 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0059 - - - 0.0