Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0061 ATGGATCCAGCTGCAGATATTCTAGCTGGATCCATTCCAATAGAGCGAGAACCAGACGATACCGGACTAGAATCTCCCCAATTTCGTGACGATATTCAGAGTATGATGACTCTGCCACCGGAAAACGCTAGCTCATTCACAGCGCTTCTGGAACTTCCGGCAACTCAAGCCATGGAGCTCCTCCACTCGATGGGCTCAGATGGACCTCAGATGACGGCGACACTCTCCGGCGAGGCTCATCATCATCCGATCAACGACGAACACAAGCCCTACTTCCACTCGCTCGTCAGCAAGTTGACCTTCCCATCGAACACAGCTCTAATCGAACGCGCTGCTAGGTTCTCAGTCTTCGCCGGAGTGCACTCGCCGGAGACGACCATCTCTGTCCCTTTAAACTCAAGCGCGAATTCGGAGAAGGTGAAGAACGAGCCGACCGCGGAAACTGATTCGAATCTCAATGCATCGCAGGCCATAGCCTCCGATCCAACGGTGGAGATCACAAACCAGAAGTCAACAAAGAGGAAGGAGCGCGAAAAGAAGGGCAAAGCATCAACAAAGAAGAGTAAGAACGAAAACTCTGAAGAAGCAGAGAAGCTTCCATACGTTCACGTACGAGCTCGTCGCGGTCAAGCTACAGACAGCCATAGCCTTGCAGAGCGAGCAAGGAGAGAGAAGATTAATGCTCGAATGAAGCAACTTCAGGAGTTGGTCCCTGGATGCAATAAGATATTAGGAACAGCTTTAGTTCTGGATGAAATCATCAACCACGTGCAATCCTTGCAAAGCCAAGTGGAGTTTTTGTCAATGAGGCTTGCGGCAGTCAAGCCAAGAGTTGATTTCAACCTTGACAGCATATTGGCTACAGAAGATGGATCCCTCATGGACAGTAACTACCCGGGTGTTGTTGTGCCTGCTATGTGGGCACAGGACAGACAACAATATCAACAACAACAGCAACAATGGAATCTAGATGCTCTTCACCAACCAGCTTGGGAGGGAAGGGAAGCTGAAAGTCATAACTTTATCACCCCTGATACTTCATTCTTGAGCTATGACTGCTCTGCCAATTCAGGTGCACTAGTCATCTCTGCACACAAATCATTTGAAGATGGAGCTGTGAAGCAGATTTCTGGCACTTATCTGACCGCCACGGTCCACCTGAAATCCGGCGTCGTTTTAGATCTCGAAGAGAACGCCACTATACTCGGCGGCACGAAGATCGAGGACTTTCCGGCCGAAGATTCGAGATGGTATGTTATCCTGGCGGAGAACGCGAGCGACGTCGGGATCACGGGGAGAGGAGTGGTGGACGGTCAGGGATCGAAGTTTGTGCAGAGGTTCGTGGAGAGGAAGAATGTTATGGTGAGCTGGAACTCGAGCGGCGCTTGCTATGGCGACGAGTGCAGACCGAGATTGGTTGGATTCATTGATTCCAGAAACGTTAAGGGCACTAATGCAAAATCCAGCTCTGACTTATCCGAAAGCTACATATTGTCAGTGGGTCCAAGGGGTATCTACTTTATCCAGAAACCAATCAGCAATCGCCACCTTACTGAGGAAATTGGCTTGCACATTGTAAGGTGTGACAACACATCCATAAGTGATGTTTCTATATACGGGGACTTCAATTCACCAAACAATGACGGGATAGACATCGAGGACTCAAACAACACCTTCATTACAAGATGCTCTATCCATACAGGTGATGATGCCATTTGCCCGAAAACATCTAACGGCCCTCTTCACAACTTAACTGTCACAAACTGCTGGATTATAACCAAATCGTCGGCTATTAAGCTCGGTAGTGCTAGTTGGTTCAATTTCCATAATCTGATGTTTGACAATATCACTATCATGGATTCTCATAGAGGGCTTGCATTTCAGATACGTGATGGAGGAAATGTGAGTGATGTAACGTTCTCAAACATAAAGATAACCACAAGGTACTATGACCCATCATGGTGGGGAAGAGCAGAGCCCATATACATCACGACCTGCCCTAGACATTCACATTCAAAAGAGGGTTCAATCTCAAACATACTCTTCATCAACATCACTTCAAATTCCGAAAACGGCATATTTCTATCCGGGTCAAAATCGGGTCTTCTTAGTAACCTCAGATTCATCAACATGAATTTGGTGTACAGAATATGGACAGAATATGATGGTGGATTGGTCGATTACAGACCGGGTTGTCAAGGATTTGTTAATCGCAGTATGGCTGGATTCATCATGGAACACATTCAAGGATTGGAAGTTGAAAATGTGGAGATGAAATGGTATAGAAATGGTGATTTGTTGAGGTGGAATAATCCTTTGGATTTTAGATCTTCTACTGTCAATAATATATCACTAGTTAATTTTCATTCAGGTTTGGTCCTGGAGTGA 2388 46.48 MDPAADILAGSIPIEREPDDTGLESPQFRDDIQSMMTLPPENASSFTALLELPATQAMELLHSMGSDGPQMTATLSGEAHHHPINDEHKPYFHSLVSKLTFPSNTALIERAARFSVFAGVHSPETTISVPLNSSANSEKVKNEPTAETDSNLNASQAIASDPTVEITNQKSTKRKEREKKGKASTKKSKNENSEEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKQLQELVPGCNKILGTALVLDEIINHVQSLQSQVEFLSMRLAAVKPRVDFNLDSILATEDGSLMDSNYPGVVVPAMWAQDRQQYQQQQQQWNLDALHQPAWEGREAESHNFITPDTSFLSYDCSANSGALVISAHKSFEDGAVKQISGTYLTATVHLKSGVVLDLEENATILGGTKIEDFPAEDSRWYVILAENASDVGITGRGVVDGQGSKFVQRFVERKNVMVSWNSSGACYGDECRPRLVGFIDSRNVKGTNAKSSSDLSESYILSVGPRGIYFIQKPISNRHLTEEIGLHIVRCDNTSISDVSIYGDFNSPNNDGIDIEDSNNTFITRCSIHTGDDAICPKTSNGPLHNLTVTNCWIITKSSAIKLGSASWFNFHNLMFDNITIMDSHRGLAFQIRDGGNVSDVTFSNIKITTRYYDPSWWGRAEPIYITTCPRHSHSKEGSISNILFINITSNSENGIFLSGSKSGLLSNLRFINMNLVYRIWTEYDGGLVDYRPGCQGFVNRSMAGFIMEHIQGLEVENVEMKWYRNGDLLRWNNPLDFRSSTVNNISLVNFHSGLVLE 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 362022 368960 - Conep10aG0006200.1 Cone10ag0061 445859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0061 795 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 100 320 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone10ag0061 795 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983(InterPro)
Cone10ag0061 795 SMART finulus 216 266 IPR011598 GO:0046983(InterPro)
Cone10ag0061 795 FunFam Basic helix-loop-helix transcription factor 207 279 - -
Cone10ag0061 795 SMART pbh1 635 665 IPR006626 -
Cone10ag0061 795 SMART pbh1 581 602 IPR006626 -
Cone10ag0061 795 SMART pbh1 528 554 IPR006626 -
Cone10ag0061 795 SMART pbh1 672 697 IPR006626 -
Cone10ag0061 795 SMART pbh1 555 576 IPR006626 -
Cone10ag0061 795 MobiDBLite consensus disorder prediction 183 198 - -
Cone10ag0061 795 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 279 IPR036638 GO:0046983(InterPro)
Cone10ag0061 795 MobiDBLite consensus disorder prediction 126 167 - -
Cone10ag0061 795 Pfam Glycosyl hydrolases family 28 521 714 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cone10ag0061 795 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 260 IPR011598 GO:0046983(InterPro)
Cone10ag0061 795 Gene3D - 207 280 IPR036638 GO:0046983(InterPro)
Cone10ag0061 795 MobiDBLite consensus disorder prediction 1 23 - -
Cone10ag0061 795 SUPERFAMILY Pectin lyase-like 377 727 IPR011050 -
Cone10ag0061 795 Gene3D - 352 719 IPR012334 -
Cone10ag0061 795 CDD bHLH_AtBPE_like 200 285 - -
Cone10ag0061 795 MobiDBLite consensus disorder prediction 126 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0061 Cone-Chr10:362022 Cone12ag1155 Cone-Chr12:9213888 1.40E-36 dispersed
Cone3ag0076 Cone-Chr3:436798 Cone10ag0061 Cone-Chr10:362022 2.24E-169 transposed
Cone10ag0061 Cone-Chr10:362022 Cone3ag0075 Cone-Chr3:434285 2.84E-244 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44146 PF00069 Pkinase 4.10E-29 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0061 - - - 0.0