Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0064 ATGGATTCAAATACCCACCATACTTTCCAGCCTCCGAGCTCTGGTTTATTGCGGCTGCGCTCTGCTCCGAGCTCTCTGGTCGCTAATTTCTCCGACGGTTCTGAATCTCAGAGATTGATTTCGAGATTCATGAATTACAGCACGAATTCTACTACGGATTCTGAATCTTCGCCTAGATTTCAGGAATTTGAAGATAAATCTTCAATCGCAGCGGCAGCGCCGGAGCTTGTGAATTGGAGAAGTTCCCAGCATGGCTTTCCTGGGTGGCCTCCGCATTATCCGAGGCAGAGCTCGAGCACGAATAACCCTTCTTCTTCTTCTGCCATGGATACGTCTTACGGATTGATAGGTTCAAATCTTTCTAGACAGAGTAGCTCCTCTGCTGGACTTTTCTCCCATTTATCTCTTCCAAACGGCTACGGGAATTACCGAGCAGTGAATGGTAATAAAGGCGGAGAAATTAGTCCGGTTTTGAACAAATTAAAGAGTCAGCTTAGCCTTTCATCTCCTAGACCACCACCTTCTTCCTTGGGGATTTTGTCACAAACCTCTGAAATCGAAAATGAAAGCATACTGGGAAATAGCCCGTCTTGGAGTAATGATTCGTCGCCTAGTTTCATGGAGTATTATTCCGGGTTTAAACGGGAACGGGATAATCAGATGAATAACGGCGAGATTGGACATAATCGAGTTCACTTATTGTCCCATCACTTGAGCTTGCCAAAGAGTTCGTCCGATGTAGTAGCCATGGAGAAGTTGTTGCAATTCCAAGATGCCGTTCCTTGTAAGATTAGAGCCAAACGCGGTTGTGCTACACATCCTCGTAGTATAGCGGAAAGGGTTAGAAGAACCCGGATCAGCGAACGAATGAGGAAACTGCAAGAGCTTGTTCCGAACATGGATAAGCAAACGAACACGGCCGACATGTTAGACTTGGCCGTTGATTATATCAAGGATCTTCAGAAGCAGTTCCAGTCTCTTAGCGATAACCGGGCGAAGTGCAAGTGTTTGAGTCTACAGAAGCCGGCTCCGAATCAAATCGTGTGA 1047 46.23 MDSNTHHTFQPPSSGLLRLRSAPSSLVANFSDGSESQRLISRFMNYSTNSTTDSESSPRFQEFEDKSSIAAAAPELVNWRSSQHGFPGWPPHYPRQSSSTNNPSSSSAMDTSYGLIGSNLSRQSSSSAGLFSHLSLPNGYGNYRAVNGNKGGEISPVLNKLKSQLSLSSPRPPPSSLGILSQTSEIENESILGNSPSWSNDSSPSFMEYYSGFKRERDNQMNNGEIGHNRVHLLSHHLSLPKSSSDVVAMEKLLQFQDAVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQFQSLSDNRAKCKCLSLQKPAPNQIV 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 378889 381175 + Conep10aG0006500.1 Cone10ag0064 445862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0064 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 320 IPR011598 GO:0046983(InterPro)
Cone10ag0064 348 SMART finulus 276 326 IPR011598 GO:0046983(InterPro)
Cone10ag0064 348 Gene3D - 271 340 IPR036638 GO:0046983(InterPro)
Cone10ag0064 348 FunFam Transcription factor bHLH130 family 271 340 - -
Cone10ag0064 348 MobiDBLite consensus disorder prediction 87 110 - -
Cone10ag0064 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 335 IPR036638 GO:0046983(InterPro)
Cone10ag0064 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 337 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone10ag0064 348 MobiDBLite consensus disorder prediction 93 110 - -
Cone10ag0064 348 Pfam Helix-loop-helix DNA-binding domain 276 321 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0064 Cone-Chr10:378889 Cone5ag1472 Cone-Chr5:9790664 8.96E-65 dispersed
Cone20ag0703 Cone-Chr20:4487995 Cone10ag0064 Cone-Chr10:378889 6.03E-35 transposed
Cone10ag0064 Cone-Chr10:378889 Cone3ag0079 Cone-Chr3:454478 1.95E-206 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44147 PF12796 Ank_2 3.40E-08 CL0465 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0064 - - - 0.0