Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0067 ATGACGATAATCAGGATCGGTTGTAGTAATAAAGACAACGGAGCTTATGATTTGGGAGAATTAGATCAAGCACTTTTTCTTTATCTTGATGCTCAAGACCCCCCCTCCACCTCTACAACTGCTCCTTATGACCTAAAACAGAGCTCAGGCGGTGGGATGAGACCTCCGACGTTGAACATTTTCCCATCGCAGCCTATGCACGTAGTACAGCCCTCATCTTCAACAAAAGTTAGTACGGTATTAGTTTCTCCGGGGAATAGCGGATCGAAGAGATTAGCGGAGCCGTTGAGCATGGAGATGGCGAATCCGGGAGCCGCTGCATCTGGAGCTGGACCTGAACCTACCAAAACTATCAAGCGTCAGGGTAACAGCAAAGGTCAGCCTTCGAGTTCGGAGCAGGAAGGACCTAAGACACAGGATCCAAAGACGTTGAGGAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGCAGACTGAGAAAGAAGGCATATGTACAGCAATTAGAGTCGAGTAGGATTAAGCTTACCCAGCTAGAGCAAGAGCTACAGCGAGCCAGACCCCAGGGCATGTTCTTAGGAGGAGGAGGAGGACCCTTTTTAGGAGGAGAGCAAGACGTTGGTATGGCCAATATTAGTTCCGACACGGCGATGTTTGACATGGAGTATGCACAGTGGTTGGAGGAGCACCACCACCTAACGTGTGAGCTCCGGGCGGCGGTGCAAGAGCATTTGCCGGAGAACGAGCTGAGAATGTTTGTAGAGAATTGCGTAGCCCATTACGATGAACTTATGAACCTAAAAGGCATGGTGGCTAAATCAGACGTGTTTCATCTTGTTTCCGGCACGTGGAAGACTCCCGCCGAGCGTTGTTTAATGTGGATTGGTGGGTTTAGGCCATCTGACCTCATCAAAGTAATTATGGGTCAAATAGATCCACTGACGGAGCAGCAGATATTAGGTATCTATGGGTTACAGCAATCAACTCAAGAAGCTGAAGAAGCTCTGTCTCAAGGCCTTGAAGCCCTAAATCAATCTTTGTCGGAAACCATAACCTCTGATTCCTTGAGCTCACCTCCTAACATGACCAACTACATGGCTCAGATGGCCGTCGCCATTAACAAGCTCTCCAACGTTGAAACCTTTGTTCGACAGGCAGATAATTTAAGGCACCAAACCATTCACCGGCTACACCAGATCTTAACGAGCCGTCAAATGGCAAGGTGTTTGTCAGCAATGGCGGAATACTTCCATCGTCTTCGAGCTCTCAGTTCACTTTGGTTAGGTCGGCCTCGCCATGCATAG 1302 48.69 MTIIRIGCSNKDNGAYDLGELDQALFLYLDAQDPPSTSTTAPYDLKQSSGGGMRPPTLNIFPSQPMHVVQPSSSTKVSTVLVSPGNSGSKRLAEPLSMEMANPGAAASGAGPEPTKTIKRQGNSKGQPSSSEQEGPKTQDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARPQGMFLGGGGGPFLGGEQDVGMANISSDTAMFDMEYAQWLEEHHHLTCELRAAVQEHLPENELRMFVENCVAHYDELMNLKGMVAKSDVFHLVSGTWKTPAERCLMWIGGFRPSDLIKVIMGQIDPLTEQQILGIYGLQQSTQEAEEALSQGLEALNQSLSETITSDSLSSPPNMTNYMAQMAVAINKLSNVETFVRQADNLRHQTIHRLHQILTSRQMARCLSAMAEYFHRLRALSSLWLGRPRHA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 388728 392320 - Conep10aG0006800.1 Cone10ag0067 445865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0067 433 Coils Coil 161 185 - -
Cone10ag0067 433 MobiDBLite consensus disorder prediction 67 86 - -
Cone10ag0067 433 CDD bZIP_HBP1b-like 142 188 - -
Cone10ag0067 433 SMART brlzneu 138 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0067 433 Pfam Seed dormancy control 233 307 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone10ag0067 433 ProSiteProfiles DOG1 domain profile. 215 429 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone10ag0067 433 Pfam bZIP transcription factor 142 182 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0067 433 Gene3D - 141 189 - -
Cone10ag0067 433 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 140 184 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0067 433 MobiDBLite consensus disorder prediction 67 144 - -
Cone10ag0067 433 FunFam BZIP family transcription factor 141 190 - -
Cone10ag0067 433 MobiDBLite consensus disorder prediction 117 137 - -
Cone10ag0067 433 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 145 160 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0067 433 SUPERFAMILY Leucine zipper domain 142 184 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0067 433 PANTHER TRANSCRIPTION FACTOR TGA9 56 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0067 Cone-Chr10:388728 Cone18ag0202 Cone-Chr18:998637 3.76E-110 dispersed
Cone10ag0067 Cone-Chr10:388728 Cone13ag0546 Cone-Chr13:5710710 3.61E-183 wgd
Cone10ag0067 Cone-Chr10:388728 Cone19ag0496 Cone-Chr19:4105973 8.03E-183 wgd
Cone10ag0067 Cone-Chr10:388728 Cone3ag0081 Cone-Chr3:472652 7.09E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44148 PF00709 Adenylsucc_synt 9.60E-71 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0067 K14431 - rcu:8277515 604.749