Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0077 ATGTTTTCATGGCTGGCAAGGATCGCGTTTTCTTGTTGGTCGCCGGTAACAAGGTATGCCCGTACGAGCAGGGATGAAGATTCTGACCAGCAAGATTCCTCCTCCTCATTTCCTTCGCAGGATAATCTTTTATGGTGCAGAGACCTTGAAAAGCACTCCTATGGCGACTTCTCCTTCGCTGTGGTTCAAGCCAATGAGGTCATTGAGGATCACAGCCAGGTCGAGACTGGTCGTGAAGGTATCTTCGTCGGAGTTTATGATGGCCATGGTGGGCCCGAGGCATCTCGGTTCATCTCCGACCACCTCTTTCGCCATCTAATGAGGCTTGCCCAAGAAAATGGAACCATATCAGAAGAAGTACTTAAAAGCGCATTTTCTGCAACAGAAGAGGGCTTTCTTACTCTTGTCCGTAGGTCGTGTGGAATAAAACCGGTGATCGCAGCGATGGGCTCTTGCTGTTTAGTGGGGGTCATTTACAGAGGGACACTATACATAGCTAATCTTGGTGACTCAAGAGCCGTGATTGGTTCCTTAGGCAAATCTAATAGGATAGTAGGCGAGCAGTTAACTAGAGAACATAATGCAAGCATGGAGGATGTTAGACAAGAACTCAGGTCATTACACCCAGATGATTCCCACATCGTCGTTTTAAAGCACGGAGTTTGGCGTATTAAAGGCATAATTCAGGTATCAAGGTCTATAGGCGATGCATACTTGAAGAAGCCGGAATTCTCTCTAGATCCTTCTTTTCCAAGATTCCATCTTCCAGAACCGATACGCCGGCCTGTTCTAACTGCCGAACCGACCTTAAACACTAGAGTATTACAACCGAATGATAAATTTCTCATCTTTGCATCGGACGGTCTATGGGAGCACATGACTAATCAAGAGGCGGTTGAAATCGTTCATAACAGCCCACGACAAGGGATTGCAAGGAGACTTGTGAAAAGGGCTCTGAACGAGGCAGCAAAGAAGAGGGAGATGAGATATGATGATCTAAATAAGGTGGAGAAAGGTGTTAGGAGATTCTTTCATGATGACATCACTGTGGTGGTTGTCTTTTTAGACAATGAATTGCCGGGAAGTATGATAGCTGTGCCGGAGTTGTCGATACGAGGGTACAATGACACTGTGGGACCCTCCAATTTCAACATTGTCTGA 1161 46.25 MFSWLARIAFSCWSPVTRYARTSRDEDSDQQDSSSSFPSQDNLLWCRDLEKHSYGDFSFAVVQANEVIEDHSQVETGREGIFVGVYDGHGGPEASRFISDHLFRHLMRLAQENGTISEEVLKSAFSATEEGFLTLVRRSCGIKPVIAAMGSCCLVGVIYRGTLYIANLGDSRAVIGSLGKSNRIVGEQLTREHNASMEDVRQELRSLHPDDSHIVVLKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLPEPIRRPVLTAEPTLNTRVLQPNDKFLIFASDGLWEHMTNQEAVEIVHNSPRQGIARRLVKRALNEAAKKREMRYDDLNKVEKGVRRFFHDDITVVVVFLDNELPGSMIAVPELSIRGYNDTVGPSNFNIV 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 444149 446671 + Conep10aG0007800.1 Cone10ag0077 445875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0077 386 ProSiteProfiles PPM-type phosphatase domain profile. 56 355 IPR001932 -
Cone10ag0077 386 PANTHER PROTEIN PHOSPHATASE 47 354 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone10ag0077 386 FunFam Probable protein phosphatase 2C 42 47 362 - -
Cone10ag0077 386 Gene3D - 27 360 IPR036457 -
Cone10ag0077 386 CDD PP2Cc 54 355 IPR001932 -
Cone10ag0077 386 Pfam Protein phosphatase 2C 80 324 IPR001932 -
Cone10ag0077 386 SMART PP2C_SIG_2 59 355 IPR001932 -
Cone10ag0077 386 SMART PP2C_4 36 353 IPR001932 -
Cone10ag0077 386 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169(InterPro)
Cone10ag0077 386 SUPERFAMILY PP2C-like 61 357 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0077 Cone-Chr10:444149 Cone8ag1300 Cone-Chr8:10628497 1.19E-140 dispersed
Cone10ag0077 Cone-Chr10:444149 Cone3ag0091 Cone-Chr3:529818 1.65E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0077 K01102 - vvi:100258978 630.943