Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0079 ATGGCCGATGGTGAGGATATTCAGCCTCTCGTTTATGACAATGGGACAGGAATGGTCAAGGCTGCATTTGCCGGAGATGATGCTCCAAGGGCTGTTTTCCCTAGCCTTGTAGGTCGTCCCCGTCATACAGGTGTGATGGTTGGTATGGGGCAAAAGGATGACTATGTTGGAGATGAAGCTCAATCCAAAAGAGGTATTTTGACTCTAAAATACCCAATTGAGCATGGCATTGTTAGCAATTGGGATGACATGGAGAAGATCTGGCATCATACTTTCTACAATGAGCTTCGAGTGGCCCAGAAGAGCACCCTGTTCCCCTAA 321 47.35 MADGEDIQPLVYDNGTGMVKAAFAGDDAPRAVFPSLVGRPRHTGVMVGMGQKDDYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAQKSTLFP 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 448303 449341 - Conep10aG0008000.1 Cone10ag0079 445877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0079 106 Gene3D - 4 105 - -
Cone10ag0079 106 Pfam Actin 5 103 IPR004000 -
Cone10ag0079 106 SUPERFAMILY Actin-like ATPase domain 5 101 IPR043129 -
Cone10ag0079 106 FunFam Actin, alpha skeletal muscle 36 73 - -
Cone10ag0079 106 Gene3D Actin; Chain A, domain 2 36 73 - -
Cone10ag0079 106 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone10ag0079 106 PRINTS Actin signature 28 37 IPR004000 -
Cone10ag0079 106 PRINTS Actin signature 51 62 IPR004000 -
Cone10ag0079 106 PRINTS Actin signature 63 85 IPR004000 -
Cone10ag0079 106 FunFam Actin, alpha skeletal muscle 3 105 - -
Cone10ag0079 106 PANTHER ACTIN 8 101 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0079 Cone-Chr10:448303 Cone1ag1283 Cone-Chr1:56236946 6.14E-66 dispersed
Cone10ag0079 Cone-Chr10:448303 Cone3ag0092 Cone-Chr3:533119 2.17E-66 transposed
Cone10ag0079 Cone-Chr10:448303 Cone9ag1250 Cone-Chr9:9202192 2.17E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0079 K10355 - zma:100191561 201.445