Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0123 ATGGATCAAGAAATCGACGTCCCGCCATTTTTCCTGTGCCCCATATCACTCGAGATCATGAAAGATCCCGTCACAATCTCCACCGGCATCACTTACGACCGTGAAAGCATAGAGAAATGGCTCTTCTCCAACAAAAACACCACCTGCCCCGTCACGAAACAGCCTCTCGCCATCTTCGACTCTGATCTAACTCCGAACCATACTCTCCGCCGTCTGATCCAATCATGGTGCACCATGAACGCTTCTCATGGCGTCGAACGAATCCCCACTCCAAAACCTCCAATCAGCAAAACCCAAATCATTAAGCTCCTCAACGAAGCCAAAAAAGCTTCTTCCCCTCTCTCTCAGCTCAAATGCCTACAAACTGTTCGATCGATTGCGTCAGAGAACGAAACCAACAAACGTTGCATTGAAACAGCCGGGGCAGCTCAATTTCTAGCTTCAATAGTTACGAGCTCGATCTCTTCGGCCCAACACGAGGATCAATCCCGTGATGTTGGATCGGATTTTTCGAGATCTGCCCATGAAGCATTAAGCATCCTCTACACTCTCCAACTCTCCGAAACGAGCCTAAAATCTCTACTAGTTAATTACAATGGCGAATTCATCGACTCATTGACTAAAGTAATCCAACGAGGAAGCTACGAGTCCAGGGCTTACGCCGTAATGTTATTAAAAGCCATGTTTGAAGTAGCCGACCCAGCCCACTTGATCAGTTTGAAGCCAGAGTTTTTCACGGAAATAATCCAAGTTCTCAACGATCAAATCTCCCACCAAGCTTCGACCTCCGCATTGCAAATCTTAATCCAGCTCTGTCCATGGGGACGGAACCGAGTGAAAGCCGTGGTGGCCAATGGAGTTTCAGTTTTAGTCGAGCTTCTTCTTGATTGTTCCGAGAAGAGAGTTTTGGAAATGGCGCTAGTCGCATTGGACTTGTTATGTGGATGTGCGGAGGGGCGGGCCGAGTTGCTGGGCCATGGGGCGGGCTTGGCCATCGTGTCGAAGAAGATTCTTAGGGTTTCGCAAAGCGGGAGCGAACGAGCGGTTAGGATCCTGTATTCGGTTTCGAGATTCTCAGGAAGTTCGAACGTCGTTCAAGACATGTTGCAACTAGGTGTAGCGGCGAAGCTATGTTTGTTACTACAAGTAGATTGTGGGTACAAGACCAAGGAGAGGGCTAAAGAGATTTTGAAGATGCATGCTAGGGTTTGGAGGAGTTCTTCGTGTATACCCGCCAATTTGCTTTCTTCATACCCGGTTTGA 1263 48.22 MDQEIDVPPFFLCPISLEIMKDPVTISTGITYDRESIEKWLFSNKNTTCPVTKQPLAIFDSDLTPNHTLRRLIQSWCTMNASHGVERIPTPKPPISKTQIIKLLNEAKKASSPLSQLKCLQTVRSIASENETNKRCIETAGAAQFLASIVTSSISSAQHEDQSRDVGSDFSRSAHEALSILYTLQLSETSLKSLLVNYNGEFIDSLTKVIQRGSYESRAYAVMLLKAMFEVADPAHLISLKPEFFTEIIQVLNDQISHQASTSALQILIQLCPWGRNRVKAVVANGVSVLVELLLDCSEKRVLEMALVALDLLCGCAEGRAELLGHGAGLAIVSKKILRVSQSGSERAVRILYSVSRFSGSSNVVQDMLQLGVAAKLCLLLQVDCGYKTKERAKEILKMHARVWRSSSCIPANLLSSYPV 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 628654 630124 - Conep10aG0012700.1 Cone10ag0123 445921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0123 420 Gene3D - 85 412 IPR011989 -
Cone10ag0123 420 SMART Ubox_2 10 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0123 420 ProSiteProfiles U-box domain profile. 6 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0123 420 Pfam U-box domain 7 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0123 420 SUPERFAMILY RING/U-box 4 83 - -
Cone10ag0123 420 PANTHER WDSAM1 PROTEIN 3 417 IPR045185 GO:0061630(InterPro)
Cone10ag0123 420 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Cone10ag0123 420 SUPERFAMILY ARM repeat 87 398 IPR016024 -
Cone10ag0123 420 CDD RING-Ubox_PUB 8 60 IPR045210 -
Cone10ag0123 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0123 Cone-Chr10:628654 Cone5ag1318 Cone-Chr5:7677052 4.59E-90 dispersed
Cone1ag0559 Cone-Chr1:5661593 Cone10ag0123 Cone-Chr10:628654 1.39E-86 wgd
Cone10ag0123 Cone-Chr10:628654 Cone11ag1421 Cone-Chr11:10164764 1.04E-164 wgd
Cone10ag0123 Cone-Chr10:628654 Cone13ag1136 Cone-Chr13:9000613 5.56E-14 wgd
Cone10ag0123 Cone-Chr10:628654 Cone13ag0469 Cone-Chr13:5129164 1.08E-163 wgd
Cone10ag0123 Cone-Chr10:628654 Cone18ag0170 Cone-Chr18:886262 2.73E-167 wgd
Cone10ag0123 Cone-Chr10:628654 Cone19ag1117 Cone-Chr19:8027342 2.87E-13 wgd
Cone10ag0123 Cone-Chr10:628654 Cone19ag0427 Cone-Chr19:3532185 1.11E-163 wgd
Cone10ag0123 Cone-Chr10:628654 Cone3ag0136 Cone-Chr3:756341 1.99E-280 wgd
Cone10ag0123 Cone-Chr10:628654 Cone5ag1317 Cone-Chr5:7662685 3.05E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0123 - - - 0.0