Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0125 ATGATGGCTACGTACTTTCATGGCAATTCAGATCAAATCCAAGCCGCCGATCAGGGTGGCCTACAGACCCTAGTACTTATGAACCACAGCTACGTCCCATACCCCGACACTCCTCCTCCACCAGCACAACCTCCGACCAATTTGGTGTTCCTCAACCCACCTCCTCCATTAACTAACTCCTTACCACCCCATGCCCACTTTTCTCACGCGACACCGTCCAACACCCAACAATTCGTCACCATCCCACTCCCCTCCACCACGTCCAACCCAACTACCGCCTACACTTCGTCCTCCTCTCAATACGACGTTTCAGCCTCCGCCCTGCATGGCAGCTTCATCCCCCACGTCCATTACAATCTCTGGAACCCAGTCGTAGTTGACCCGTCTACTGCAGCGCGTGAAACTCAACGCCCTCAACAGGGACTCTCCCTTAGCCTCTCCTCAGAACACCCAGATGCGGGATTTGGTGCATTCCAAGCTGATCGGCGTCATGAAGTACTTCCCTCCCCTCAAGCCCAGGCCCAGCAAGCAATTTCCGGCCGATCACCTAACTCGTCTGCTTCCGGAACTACAGTTAATAACGTTGCTCCGAACAATATACAGGGAGTTTTGCTCAGCTCTAGGTACATGAGGGCGACCCAAGAGCTTCTAGAAGAGGTTGTAAGTGTGGGTAATAACGGACTTCACACGACGGAATCATTGAAGAAGAGAAGTGCTAGTCTGCAGCAAATGAAGCCGACCGGAGATTCGTCGGTGGGTGGCTCCGGAGATGGCTCAATTGGGTCTGAAGCAGCCGGAGAAAAACATGGTAACAGCGAGCTTTCAGCTGCTGAACGGCAAGAAATTCAGATGAAGAAGGCTAAGCTTATTAGCATGCTTGATGAGGTGGAGCAGAGGTACAGACAATACCACCACCAAATGCAGATTGTGACATCAGCGTTCAAGCAAGTAGCCGGAATCGGGGCGGCAAGAACATACACTTCCCTAGCACTCCAAATGATCTCAAAACAATTCCGGTGCTTGAAAGACACAATCACCAGCCAAATCCGAGCAGCCAACAAGAGATTAGGGGAAGAAGAAAGCCTAGGAAAGAAGCAAGGTTCTAGACTCAAATACCTTGACCATCATATCCGGCAACAAAGTGCTCTTCAGCAGTTGGGAATGATCCAGCATAATGCTTGGAGAACCCAGAGAGGCTTGCCGGAAAGATCTGTTTCTGTTCTTCGCTCTTGGTTCTTCGAGCATTTCCTCCACCCTTATCCAAAGGATTCCGACAAGCACATGCTTGCGAAACAGACAGGGCTGACCAGGAGCCAGGTTTCGAATTGGTTCATAAATGCACGGGTTCGGCTTTGGAAACCAATGGTAGAAGAGATGTACCTGGAGGAAATCAAGGAGCAAGAACAGAATGGATCAGAAGGGGGCAACAAAATAATGAACAAGAGCAATACTAATAATAATGAAGACTCAACAATTTCTAAGTCAACCTCCACTCCACAAGATAAATCTTGTGCTGCTGCTGAAACTCAAAGTCAACCTCCGACAAACTCGAATGCTGTTTCGTCCCCTGTACGAGGAAATGTTCGGAACCAATCCGGTTTTATTACACTCATTGGGTCATCAGAACTGGACCAAATGACACAAGGAAGTCCTAAAAAACAGAAAGATTCCGGACAAGAACACAACAATAGTAGTGAGCATGTTTTTATGAATTGCAGTAACGAAAATCAGCGGAGTAGAGATGGCTACCCCTTTATGGGAGGGTTCGGACAATACTTGATTGGGGAAATCCCGCGGTTTGAGGCGGAGCAGTATCCAACAAGATTTTCATCGGGAAATGGAGTGTCTCTCACTCTAGGCCTTCCTCATGGTGAAAACCTTTCTTTATCAGCGGCTCATCAGACTTTCCTTCCTCCGAATCAAATCATTCATTTGGGGAGAAGGATAGAAATGGAAGAACAGAATGAGTTTGGTGCAATAAGCAGTTCGACAACAGTACCACACTCATCTTCAACTGCATTTGAGAATCTCAACATTCAGAACCGGAAGCGGTTTGTGGCCAAATTGATGCCGGACTATGTGGCCTGA 2088 48.32 MMATYFHGNSDQIQAADQGGLQTLVLMNHSYVPYPDTPPPPAQPPTNLVFLNPPPPLTNSLPPHAHFSHATPSNTQQFVTIPLPSTTSNPTTAYTSSSSQYDVSASALHGSFIPHVHYNLWNPVVVDPSTAARETQRPQQGLSLSLSSEHPDAGFGAFQADRRHEVLPSPQAQAQQAISGRSPNSSASGTTVNNVAPNNIQGVLLSSRYMRATQELLEEVVSVGNNGLHTTESLKKRSASLQQMKPTGDSSVGGSGDGSIGSEAAGEKHGNSELSAAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVTSAFKQVAGIGAARTYTSLALQMISKQFRCLKDTITSQIRAANKRLGEEESLGKKQGSRLKYLDHHIRQQSALQQLGMIQHNAWRTQRGLPERSVSVLRSWFFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGSEGGNKIMNKSNTNNNEDSTISKSTSTPQDKSCAAAETQSQPPTNSNAVSSPVRGNVRNQSGFITLIGSSELDQMTQGSPKKQKDSGQEHNNSSEHVFMNCSNENQRSRDGYPFMGGFGQYLIGEIPRFEAEQYPTRFSSGNGVSLTLGLPHGENLSLSAAHQTFLPPNQIIHLGRRIEMEEQNEFGAISSSTTVPHSSSTAFENLNIQNRKRFVAKLMPDYVA 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 633452 636783 - Conep10aG0012900.1 Cone10ag0125 445923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0125 695 Coils Coil 279 299 - -
Cone10ag0125 695 MobiDBLite consensus disorder prediction 236 257 - -
Cone10ag0125 695 ProSiteProfiles 'Homeobox' domain profile. 391 454 IPR001356 GO:0003677(InterPro)
Cone10ag0125 695 MobiDBLite consensus disorder prediction 539 553 - -
Cone10ag0125 695 Pfam Homeobox KN domain 411 450 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone10ag0125 695 SMART HOX_1 394 458 IPR001356 GO:0003677(InterPro)
Cone10ag0125 695 MobiDBLite consensus disorder prediction 131 195 - -
Cone10ag0125 695 MobiDBLite consensus disorder prediction 539 565 - -
Cone10ag0125 695 Gene3D - 397 473 - -
Cone10ag0125 695 MobiDBLite consensus disorder prediction 169 195 - -
Cone10ag0125 695 Pfam Associated with HOX 203 346 IPR006563 -
Cone10ag0125 695 SMART prehox3 198 347 IPR006563 -
Cone10ag0125 695 MobiDBLite consensus disorder prediction 471 526 - -
Cone10ag0125 695 MobiDBLite consensus disorder prediction 132 147 - -
Cone10ag0125 695 SUPERFAMILY Homeodomain-like 398 460 IPR009057 -
Cone10ag0125 695 MobiDBLite consensus disorder prediction 236 275 - -
Cone10ag0125 695 CDD homeodomain 394 455 IPR001356 GO:0003677(InterPro)
Cone10ag0125 695 FunFam BEL1-like homeodomain protein 9 397 459 - -
Cone10ag0125 695 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 149 497 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone10ag0125 695 MobiDBLite consensus disorder prediction 467 526 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0125 Cone-Chr10:633452 Cone12ag1171 Cone-Chr12:9284332 6.34E-84 dispersed
Cone10ag0125 Cone-Chr10:633452 Cone13ag0468 Cone-Chr13:5121282 1.38E-196 wgd
Cone10ag0125 Cone-Chr10:633452 Cone19ag0426 Cone-Chr19:3526526 7.06E-204 wgd
Cone10ag0125 Cone-Chr10:633452 Cone3ag0138 Cone-Chr3:763964 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44155 PF13516 LRR_6 0.0015 CL0022 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0125 - - - 0.0