Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0135 ATGACCGACGGTGCTCGAGCTCCAAGCCATCAGGAGCCACGGGCGCCAAGCGGTGGTCAGATCGCGCAGCCATTAAAGCGGCATCTGTCATTTACGTCGATGAAACCGCCATTCACTCCTCCTGACGATTATCATCGTTTTAGCGGCGGTGCTCCAAGATCTGCCGATCGAGAAGCTGAAGCTATCGTAGTTAGATCCCCTCAATTAAAGCAGAAAAGTGCAACAGACAGTAATGAGGTTGAATCCACTGAATGGACTAGTGGTCCTGGGTGTACTAAAGTTGTTAATAGCCCCCTTCACACGCCTGTATCTGCAAAAGGGGGAAAGACTTACAATAAGTCAAAGGCTTCAAAGGGCAATAGATCTGGACCTCAAACACCTGTCTCAAATGCCGGTTCCCCTTCCCCCCTTACTCCAGCTGGAAGCTGTCGATATGACAGTTCACTAGGCCTCTTGACTAAGAAGTTCATCAATTTAATTAAGCATGCAGAGGATGGTATTCTTGATTTAAACAAGGCTGCAGAGACTTTAGAGGTACAAAAGAGGCGGATATATGACATAACAAATGTCTTGGAAGGCATAGATCTCATTGAAAAGACGCTCAAGAACAGAATTCGATGGAAGGGACTCAATGCTTCAGGGCAAGGGAGTATGGATGCTGACATCTCTGTATTACAGGCTGAAGTTGAAAACCTTTCCTTCGAAGAGCGGGGATTAGATGATAGGATAAGAGAATTACAGGAAAGACTAAGGGACATGAGTGAAGATGAAAACAACCAAAAATGGCTTTTTCTAACAGAAGAAGACATTAAAAGTGTACCCTGCTTCCAGAATGAAACATTGATAGCAGTTAAAGCTCCTCACGGAACTACTCTAGAAGTCCCGGATCCTGACAATGCTGCTGATTATCCTCAGAGGCGATATAGGATAATCCTTAGAAGCACGATGGGTCCAATCGATGTTTATCTTGTTAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATGTAGCTGAGCCCCCAAAGGGGATCCCACATGCTTCAAGTTCTGGCTCAAATGAACACCCAGCAACAGAAGTTTTTCCTTTGGGGAGTGGTATTAGGGAGGACGTCGGCTTACAGGCACATCAGATAGACCATAGATTCTCTGATATCAATAATTCACAGGACTATCCTGGGGGAATGATGAAGATTGTTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTTGTATCGGATGCTGGGGTTAGCATTACAGACATGTGGAGAACAGACTCAGCTGATGGGTGGAATGCATCGGATATTCTCAACACAGACATTGGGTTATCTGATCCAAGTTCCCCAAAGCCGCAAACTCCACCCTCTGCAACTGTCGCAGTGCCATCATCTTCTTTTAACTTCATTAACAAAAGCTAA 1416 44.99 MTDGARAPSHQEPRAPSGGQIAQPLKRHLSFTSMKPPFTPPDDYHRFSGGAPRSADREAEAIVVRSPQLKQKSATDSNEVESTEWTSGPGCTKVVNSPLHTPVSAKGGKTYNKSKASKGNRSGPQTPVSNAGSPSPLTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIDLIEKTLKNRIRWKGLNASGQGSMDADISVLQAEVENLSFEERGLDDRIRELQERLRDMSEDENNQKWLFLTEEDIKSVPCFQNETLIAVKAPHGTTLEVPDPDNAADYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNVAEPPKGIPHASSSGSNEHPATEVFPLGSGIREDVGLQAHQIDHRFSDINNSQDYPGGMMKIVPSEVDNDADYWLVSDAGVSITDMWRTDSADGWNASDILNTDIGLSDPSSPKPQTPPSATVAVPSSSFNFINKS 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 701793 706142 + Conep10aG0013900.1 Cone10ag0135 445933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0135 471 SUPERFAMILY Winged helix DNA-binding domain 144 207 IPR036390 -
Cone10ag0135 471 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983(InterPro)
Cone10ag0135 471 Gene3D - 216 326 - -
Cone10ag0135 471 MobiDBLite consensus disorder prediction 1 139 - -
Cone10ag0135 471 Gene3D - 138 211 IPR036388 -
Cone10ag0135 471 CDD E2F_DD 222 326 IPR032198 GO:0046983(InterPro)
Cone10ag0135 471 PANTHER TRANSCRIPTION FACTOR E2F 35 424 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone10ag0135 471 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone10ag0135 471 Coils Coil 229 256 - -
Cone10ag0135 471 MobiDBLite consensus disorder prediction 107 139 - -
Cone10ag0135 471 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone10ag0135 471 MobiDBLite consensus disorder prediction 438 471 - -
Cone10ag0135 471 MobiDBLite consensus disorder prediction 68 99 - -
Cone10ag0135 471 MobiDBLite consensus disorder prediction 456 471 - -
Cone10ag0135 471 Coils Coil 160 180 - -
Cone10ag0135 471 FunFam E2F transcription factor 1 138 211 - -
Cone10ag0135 471 SUPERFAMILY E2F-DP heterodimerization region 222 326 IPR037241 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0135 Cone-Chr10:701793 Cone13ag0116 Cone-Chr13:694206 1.30E-09 dispersed
Cone1ag0555 Cone-Chr1:5528938 Cone10ag0135 Cone-Chr10:701793 9.76E-172 wgd
Cone10ag0135 Cone-Chr10:701793 Cone3ag0151 Cone-Chr3:841787 1.15E-288 wgd
Cone10ag0135 Cone-Chr10:701793 Cone5ag1327 Cone-Chr5:7825728 1.18E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44156 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0135 K06620 - mdm:103414950 643.269