Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0135 ATGACCGACGGTGCTCGAGCTCCAAGCCATCAGGAGCCACGGGCGCCAAGCGGTGGTCAGATCGCGCAGCCATTAAAGCGGCATCTGTCATTTACGTCGATGAAACCGCCATTCACTCCTCCTGACGATTATCATCGTTTTAGCGGCGGTGCTCCAAGATCTGCCGATCGAGAAGCTGAAGCTATCGTAGTTAGATCCCCTCAATTAAAGCAGAAAAGTGCAACAGACAGTAATGAGGTTGAATCCACTGAATGGACTAGTGGTCCTGGGTGTACTAAAGTTGTTAATAGCCCCCTTCACACGCCTGTATCTGCAAAAGGGGGAAAGACTTACAATAAGTCAAAGGCTTCAAAGGGCAATAGATCTGGACCTCAAACACCTGTCTCAAATGCCGGTTCCCCTTCCCCCCTTACTCCAGCTGGAAGCTGTCGATATGACAGTTCACTAGGCCTCTTGACTAAGAAGTTCATCAATTTAATTAAGCATGCAGAGGATGGTATTCTTGATTTAAACAAGGCTGCAGAGACTTTAGAGGTACAAAAGAGGCGGATATATGACATAACAAATGTCTTGGAAGGCATAGATCTCATTGAAAAGACGCTCAAGAACAGAATTCGATGGAAGGGACTCAATGCTTCAGGGCAAGGGAGTATGGATGCTGACATCTCTGTATTACAGGCTGAAGTTGAAAACCTTTCCTTCGAAGAGCGGGGATTAGATGATAGGATAAGAGAATTACAGGAAAGACTAAGGGACATGAGTGAAGATGAAAACAACCAAAAATGGCTTTTTCTAACAGAAGAAGACATTAAAAGTGTACCCTGCTTCCAGAATGAAACATTGATAGCAGTTAAAGCTCCTCACGGAACTACTCTAGAAGTCCCGGATCCTGACAATGCTGCTGATTATCCTCAGAGGCGATATAGGATAATCCTTAGAAGCACGATGGGTCCAATCGATGTTTATCTTGTTAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATGTAGCTGAGCCCCCAAAGGGGATCCCACATGCTTCAAGTTCTGGCTCAAATGAACACCCAGCAACAGAAGTTTTTCCTTTGGGGAGTGGTATTAGGGAGGACGTCGGCTTACAGGCACATCAGATAGACCATAGATTCTCTGATATCAATAATTCACAGGACTATCCTGGGGGAATGATGAAGATTGTTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTTGTATCGGATGCTGGGGTTAGCATTACAGACATGTGGAGAACAGACTCAGCTGATGGGTGGAATGCATCGGATATTCTCAACACAGACATTGGGTTATCTGATCCAAGTTCCCCAAAGCCGCAAACTCCACCCTCTGCAACTGTCGCAGTGCCATCATCTTCTTTTAACTTCATTAACAAAAGCTAA 1416 44.99 MTDGARAPSHQEPRAPSGGQIAQPLKRHLSFTSMKPPFTPPDDYHRFSGGAPRSADREAEAIVVRSPQLKQKSATDSNEVESTEWTSGPGCTKVVNSPLHTPVSAKGGKTYNKSKASKGNRSGPQTPVSNAGSPSPLTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIDLIEKTLKNRIRWKGLNASGQGSMDADISVLQAEVENLSFEERGLDDRIRELQERLRDMSEDENNQKWLFLTEEDIKSVPCFQNETLIAVKAPHGTTLEVPDPDNAADYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNVAEPPKGIPHASSSGSNEHPATEVFPLGSGIREDVGLQAHQIDHRFSDINNSQDYPGGMMKIVPSEVDNDADYWLVSDAGVSITDMWRTDSADGWNASDILNTDIGLSDPSSPKPQTPPSATVAVPSSSFNFINKS 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 701793 706142 + Conep10aG0013900.1 Cone10ag0135 445933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0135 471 SUPERFAMILY Winged helix DNA-binding domain 144 207 IPR036390 -
Cone10ag0135 471 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983(InterPro)
Cone10ag0135 471 Gene3D - 216 326 - -
Cone10ag0135 471 MobiDBLite consensus disorder prediction 1 139 - -
Cone10ag0135 471 Gene3D - 138 211 IPR036388 -
Cone10ag0135 471 CDD E2F_DD 222 326 IPR032198 GO:0046983(InterPro)
Cone10ag0135 471 PANTHER TRANSCRIPTION FACTOR E2F 35 424 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone10ag0135 471 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone10ag0135 471 Coils Coil 229 256 - -
Cone10ag0135 471 MobiDBLite consensus disorder prediction 107 139 - -
Cone10ag0135 471 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone10ag0135 471 MobiDBLite consensus disorder prediction 438 471 - -
Cone10ag0135 471 MobiDBLite consensus disorder prediction 68 99 - -
Cone10ag0135 471 MobiDBLite consensus disorder prediction 456 471 - -
Cone10ag0135 471 Coils Coil 160 180 - -
Cone10ag0135 471 FunFam E2F transcription factor 1 138 211 - -
Cone10ag0135 471 SUPERFAMILY E2F-DP heterodimerization region 222 326 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0135 K06620 - - mdm:103414950 643.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0135 Cone-Chr10:701793 Cone13ag0116 Cone-Chr13:694206 1.30E-09 dispersed
Cone1ag0555 Cone-Chr1:5528938 Cone10ag0135 Cone-Chr10:701793 9.76E-172 wgd
Cone10ag0135 Cone-Chr10:701793 Cone3ag0151 Cone-Chr3:841787 1.15E-288 wgd
Cone10ag0135 Cone-Chr10:701793 Cone5ag1327 Cone-Chr5:7825728 1.18E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44156 None None None None Cone TF