Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0164 ATGGCGGAAGAGCAGAGATGCCAAGCGCCGGACGGCCACCGTCTTTGCGCAAATAACTGTGGCTTCTTTGGCAGCTCGGCGACCATGAACCTCTGCTCCAAATGCTACAGAGACTTCCGCCTCAGGGAGGAACAGCAAGTCTCCACCAAATCCACCATCGAAGCCGCTCTCACTGCCACCTCTTCGTCTTCTTCGTCTTCTTCGTCTTCTTCTCCTGATCTCTCTGCTGCTGCTGCTCCTCCTCCTCTTCAGGCGTTGACCTCTCCGGTGCTTTCCGAAGATGTGAAAGCTCTGACGGTGTCGACCGGTGGTTTGGAGGAGGCGAAACAATCCAACAGGTGCTCGGTGTGTAGGAAGCGGGTGGGGCTGACCGGGTTTAGGTGCAAGTGCGGGACCACTTGTTGCGGGACCCACCGGTACCCTGAAGAACACGGTTGTACGTTCGACTTCAAGAGAGTTGGGAGAGAGGGAATCGCGCGAGCAAATCCCCTCGTTAAAGGCCATAAGTTGAAGAGGATCTGA 522 56.13 MAEEQRCQAPDGHRLCANNCGFFGSSATMNLCSKCYRDFRLREEQQVSTKSTIEAALTATSSSSSSSSSSSPDLSAAAAPPPLQALTSPVLSEDVKALTVSTGGLEEAKQSNRCSVCRKRVGLTGFRCKCGTTCCGTHRYPEEHGCTFDFKRVGREGIARANPLVKGHKLKRI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 815531 816515 + Conep10aG0016900.1 Cone10ag0164 445962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0164 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270(InterPro)
Cone10ag0164 173 Gene3D - 90 169 IPR035896 -
Cone10ag0164 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Cone10ag0164 173 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone10ag0164 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 173 IPR050652 -
Cone10ag0164 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270(InterPro)
Cone10ag0164 173 MobiDBLite consensus disorder prediction 58 82 - -
Cone10ag0164 173 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone10ag0164 173 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone10ag0164 173 MobiDBLite consensus disorder prediction 58 75 - -
Cone10ag0164 173 FunFam Zinc finger AN1-type containing 6 91 169 - -
Cone10ag0164 173 SUPERFAMILY AN1-like Zinc finger 106 167 IPR035896 -
Cone10ag0164 173 Gene3D - 1 73 - -
Cone10ag0164 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0164 Cone-Chr10:815531 Cone18ag0208 Cone-Chr18:1024337 3.28E-50 dispersed
Cone10ag0164 Cone-Chr10:815531 Cone13ag1190 Cone-Chr13:9240133 3.07E-70 wgd
Cone10ag0164 Cone-Chr10:815531 Cone19ag1173 Cone-Chr19:8258367 1.22E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0164 - - - 0.0