Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0177 ATGGCTTCCTTTTCTGCAACTAGTGAAATTGTTGAAGCAAGGGAAGAAACATATCAGGGTCAACCTTCCATGGATTCATATAGAATGAATTACAGATCAGCTGTCAAAGAAGGGAAGCTTCCAATGGTAAAAGTGGGGTACAAGAATTTTGTAGAGGAAGATATTAATCACCTCTTCAAGGCCATCAGTCTTAAAGACTTATCGAAGAGTCAAGAGGGGCTTTCACAACCAGGGACAAGCACTATGAGGAAAAGTGCATTAAAAAAGCCAATTGCAGTGCCTCGTTCATCGGGAATTGGGATTTCCGAACAGATTAATCTGAAACAAGCATTAAGAGAGCTCTGCCTTTCAAAGGCATCAGAAATGGCAGCTACAAAACGATTATCAAAATCTAGACCTTCAGGTGCATCAGAAGCTGGACACATTAAGAGGTTGTACAATTCTGTTTTGATTGAAGCAAGTCGGTCAGGTGCTTCACTAGTTCCAGAGGACAGCTTATCCAAACCTGTGAAAATTGATAATCTTAAAATACACAGAGTCAAGTCCCCAAACAAAATCCCTCCTTTGTCTCCTCGATCAGTCGTTATGACACCACAAAGCTCCAATAAGATTACAGAAGAGGAAAGCGATACTGTCTACAGGCCAAAGAAACTTGGAGCTCAAACACTGAAGGAAGAACTAGCACGGAAAGAGAAAGATGCATCCCCTCCTTCGGCTTCCTCGTCTAATACTATTCGCAATGTACTAGTGCAGGATGAGGATACCCCTGCCTCTTGCAAGGTAGCAAATAAAGTGTCATCATCAAAGCTAGGTAGGAAAGGCAGGTTGCAAACTGTAGCTTCACCGGTCAAGGGAAACAGGGCTAGCAGATTCTCGAGAAATCCTGCTAGGACAGTTAAACCAGTTATCAGGAACAAAGCGCTTGCAAAGAAGAAAGTAAAACAGGAATCAACCATTGATATCTGCTCTTCTAGTACACAAAATGAAGTGACTGAAACAGTGAATCCTCGTGCAAAACCTTTTATATGTGAGAGATGCCAGTGTGCAATAGAGATTGCAGGTAATGAATCGAAAGAAATTTATTTGGAATCAAAATTTAACAGTGTTGCGGTTGAAGTAAGCTTGATGAATAATGGGAAGTCTGGTTCAGGCAAAGATGCTATTGTGAAAGTGAAAAGGAACATGAAAATGCAAGACAAGGGTGAGTTTTCCCAAAGCTCAAAAAGCAGTCAGGGGGAGTACAGCAGCAGCACTACAAGTATCAGTGAGGAAAGCAATGCAAGTGGATCTAGCTCTGGGAACAGACCCCACATGTCAAAAGATGTCAGGTGGGAAGCAATTCGTCAGGTTCAGAGACAGAGTGGGGCCCTCAGCTTGACCCACTTCAATCTGTTGAAGAAGCTTGGTTGTGGAGATATTGGAACTGTATATCTTGCCGAATTAGTTGGTACGAATTGCCTATTTGCTATAAAAGTGATGGACAATGAGTTCTTGGCAAGGAGGAAGAAGATGCCAAGGGCTCAGACAGAGAGAGAAATACTTAGAATGCTTGATCATCCTTTTCTTCCTACGCTTTATTCTCAGTTTACATCGGATAACCTGTCTTGTCTGGTCATGGAGTATTGTCCAGGAGGAGACCTTCATGTCCTTAGGCAGAAGCACCTTGGCAGGGTATTCTCTGAACCTGCGGCAAGATTTTATGTGGCAGAAGTCCTCCTTGCTTTGGAGTACTTACACATGCTTGGAGTAGTTTATCGAGATTTGAAACCAGAGAACATTCTGGTTCGAGAAGATGGTCACATTATGCTCACTGACTTTGACCTGTCACTCCGATGCACAGTCAATCCAACTCTCCTAATATCATCTTCATTCAACCTAGACCCAGTTAGAATATCCGGTCCATGCACAGGATCCACTTGTGCCGAGCCCTTTTGCATTGAACCAGCCTGTCAAGTTCCATGCTTCAGCCCAAGATTCTTACCTAACTCCACCAGAACAAGAAAGTTAAAATCTGACCTTTCAATCCCAACAAGATCATTGCCCCAGCTGGTTGTGGAGCCCACTGAAGCTCGATCGAATTCCTTCGTTGGGACCCACGAATATTTGGCCCCGGAAATCATTAAAGGAGAGGGTCATGGAGCAGCAGTTGATTGGTGGACGTTTGGGGTGTTTCTTTATGAGCTTTTATACGGGAAAACGCCATTCAAAGGGCCCAATAACGAAGAGACATTGACCAATGTGGTTTTGCAGGGCCTGAAATTTCCGGACAGCCCGCTTGTTAGTTTCCAGGCTAGGGACCTTATCCGAGGCCTGTTGGTGAAGGGGCCTGAGAACCGATTTGGGTCAGAGAAAGGTGCGGCTGAGATTAAACAGCATCCCTTTTTCGAAGGCTTGAACTGGGCTTTGATAAGGTGTGCTATTCCACCAGAACTGCCCAACCAGTTCTGTGATTTTGATGTTACAAACTTTGCTGCCACTGAGCCAAATAAGAGCAAGTACTTGGAGTACAAGGCTAGCGGAGAACACATAGAGTTCGAGTTGTTTTAG 2547 43.97 MASFSATSEIVEAREETYQGQPSMDSYRMNYRSAVKEGKLPMVKVGYKNFVEEDINHLFKAISLKDLSKSQEGLSQPGTSTMRKSALKKPIAVPRSSGIGISEQINLKQALRELCLSKASEMAATKRLSKSRPSGASEAGHIKRLYNSVLIEASRSGASLVPEDSLSKPVKIDNLKIHRVKSPNKIPPLSPRSVVMTPQSSNKITEEESDTVYRPKKLGAQTLKEELARKEKDASPPSASSSNTIRNVLVQDEDTPASCKVANKVSSSKLGRKGRLQTVASPVKGNRASRFSRNPARTVKPVIRNKALAKKKVKQESTIDICSSSTQNEVTETVNPRAKPFICERCQCAIEIAGNESKEIYLESKFNSVAVEVSLMNNGKSGSGKDAIVKVKRNMKMQDKGEFSQSSKSSQGEYSSSTTSISEESNASGSSSGNRPHMSKDVRWEAIRQVQRQSGALSLTHFNLLKKLGCGDIGTVYLAELVGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYSQFTSDNLSCLVMEYCPGGDLHVLRQKHLGRVFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLISSSFNLDPVRISGPCTGSTCAEPFCIEPACQVPCFSPRFLPNSTRTRKLKSDLSIPTRSLPQLVVEPTEARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGPNNEETLTNVVLQGLKFPDSPLVSFQARDLIRGLLVKGPENRFGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPNQFCDFDVTNFAATEPNKSKYLEYKASGEHIEFELF 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 861393 865268 + Conep10aG0018200.1 Cone10ag0177 445975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0177 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0177 848 MobiDBLite consensus disorder prediction 226 246 - -
Cone10ag0177 848 FunFam Serine/threonine-protein kinase D6PK-like 460 545 - -
Cone10ag0177 848 MobiDBLite consensus disorder prediction 262 289 - -
Cone10ag0177 848 MobiDBLite consensus disorder prediction 400 437 - -
Cone10ag0177 848 Gene3D Phosphorylase Kinase; domain 1 460 541 - -
Cone10ag0177 848 Gene3D Transferase(Phosphotransferase) domain 1 690 813 - -
Cone10ag0177 848 MobiDBLite consensus disorder prediction 182 213 - -
Cone10ag0177 848 Pfam Protein kinase domain 463 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0177 848 Pfam Protein kinase domain 692 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0177 848 CDD STKc_phototropin_like 460 812 - -
Cone10ag0177 848 MobiDBLite consensus disorder prediction 399 438 - -
Cone10ag0177 848 ProSiteProfiles AGC-kinase C-terminal domain profile. 796 848 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0177 848 FunFam serine/threonine-protein kinase D6PK-like 690 813 - -
Cone10ag0177 848 SUPERFAMILY Protein kinase-like (PK-like) 438 814 IPR011009 -
Cone10ag0177 848 PANTHER FLIPPASE KINASE 1-RELATED 323 819 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone10ag0177 848 Gene3D Transferase(Phosphotransferase) domain 1 542 611 - -
Cone10ag0177 848 FunFam serine/threonine-protein kinase D6PK-like 546 613 - -
Cone10ag0177 848 ProSiteProfiles Protein kinase domain profile. 462 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0177 848 SMART serkin_6 462 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0177 848 Gene3D Phosphorylase Kinase; domain 1 814 828 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0177 Cone-Chr10:861393 Cone18ag0964 Cone-Chr18:7023430 7.62E-178 dispersed
Cone1ag0527 Cone-Chr1:5199629 Cone10ag0177 Cone-Chr10:861393 2.95E-125 wgd
Cone10ag0177 Cone-Chr10:861393 Cone11ag1361 Cone-Chr11:9912074 1.25E-221 wgd
Cone10ag0177 Cone-Chr10:861393 Cone13ag1200 Cone-Chr13:9287179 8.14E-290 wgd
Cone10ag0177 Cone-Chr10:861393 Cone18ag0217 Cone-Chr18:1076442 2.16E-225 wgd
Cone10ag0177 Cone-Chr10:861393 Cone19ag1184 Cone-Chr19:8299360 9.34E-290 wgd
Cone10ag0177 Cone-Chr10:861393 Cone3ag0209 Cone-Chr3:1113014 0 wgd
Cone10ag0177 Cone-Chr10:861393 Cone5ag1353 Cone-Chr5:8149607 2.46E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81796 PF00179 UQ_con 9.70E-14 CL0208 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0177 - - - 0.0