Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0183 ATGGAGGATCAGTATGGCATGGGCGATATACGGCAGCTGATTAGTAACGGCGGAAGAGCTCTCTTTGCTCCGGTCACTGACCATCCTCATCGTCATCAATTCTACTCAGGCAACCGGAATATTCTACCACAACCAGCTGCAACTGGCCAAAACCACCACCACCACCACGGAAATCACTATGAGTTGATAATGGACATGACAGCTGGCGGTGGCGGAGGCGGCAGCCAAGATGTCAGTACAGATCATCACATGATGCCTCGTGGGCTTACTGATTTTAGCTCCGATTCAGCTGCGAACATTGGCAGCACTAGAGCAACTACTAATCCTAGTCATGTCAGTAGTGTACCGAGTCTGAGTGGTGGGTTTGAAGTTGAAGCCGGAGGGGATGCAGGAACCGGACGTTGGCCGAGACAAGAGACTCTTATCCTTCTCGAGATCAGATCCCGCCTTGATCCTAAGTTCAAAGAGGCCAATCAAAAGGGTCCCCTTTGGGATGAAGTTTCTAGGATCATGTCTGAGGAACATGGATACCAAAGGAGTGGGAAAAAATGTAGAGAGAAATTCGAGAACTTGTACAAATATTACAAGAAAACCAAGGAAGGCAAATCTGGAAGACAGGACGGTAAGCATTATAGATTCTTTGGTCAGCTTGAAGCCCTGTATGGATCATCAGAATCGACAACGCTTACTTCTTCTAACAATTATACCAACATCTCACTTCCCGATCACCAAAACCCTTTTCTAATCCCAAATCCTAACACCCCAAATTCTCAAAAACAATATGATCGTTATATCAATTACAATAACAACAGCCTCAGTCTCTCTAATAACTCAACCGATTTTGATTCGTCTTCGTCCGAGGACAATGATGTCGATCAAAGGAAGGGTAGTGTCGGAAGATTGAGAAGAAGAAGTTGGAAGGTGAAGATAAAAGAGTTCATTGATTCACAGATGAGGAAGTTGATAGAGAAGCAAGAGGCTTGGTTGGAGAAATTGATGAGAACACTTGAACAGAAGGAGAAAGAAAAAATGTTGAGAGAAGAGGAATGGAGGAAAGAAGAGGCTCTACGTATTGATAAAGAGCATAAGTTTTGGGCGAAGGAAAGAGCATGGATCGAAGCTCGGGATGCTGCTTTAATGGAGGCTTTGCAGAAACTAGATCATGATCATCAAGATGGAGGAAGTAACGATCGTGATCATGATCATCAATTGCTAAACATGAACATTTATCAGAGGAAACCTAATAATGCAACTAGGAAAAGGAAGGAGAATTCAAGGAGTTGTTGCATCAATAGTAATACTAATAATAACTATCATGAGTTTAATAGCTCGTGTTTATATAGTAGTAGTATTCAAGGAGGAGGAGGAGTTTATGGAGAAATGAATGAACAAGAGATGGAAGGTTCGAGAATGGTAGTACAACAAGGCAATGGCGGGTCTGATTCGCCTTCTAGTTCTAATGGTAATGGAGCTGGAACTAATCAGAATTTGGTGCAAGATGGTTCGTTTCGTTTCTTGATGGGTGGAGGAGGGGTTCAAGGTGAGTCGACTTTGTGGGAGAATTATGGACTGAGGCTCAACAATGGCGAACAAAATTAA 1599 43.15 MEDQYGMGDIRQLISNGGRALFAPVTDHPHRHQFYSGNRNILPQPAATGQNHHHHHGNHYELIMDMTAGGGGGGSQDVSTDHHMMPRGLTDFSSDSAANIGSTRATTNPSHVSSVPSLSGGFEVEAGGDAGTGRWPRQETLILLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKSGRQDGKHYRFFGQLEALYGSSESTTLTSSNNYTNISLPDHQNPFLIPNPNTPNSQKQYDRYINYNNNSLSLSNNSTDFDSSSSEDNDVDQRKGSVGRLRRRSWKVKIKEFIDSQMRKLIEKQEAWLEKLMRTLEQKEKEKMLREEEWRKEEALRIDKEHKFWAKERAWIEARDAALMEALQKLDHDHQDGGSNDRDHDHQLLNMNIYQRKPNNATRKRKENSRSCCINSNTNNNYHEFNSSCLYSSSIQGGGGVYGEMNEQEMEGSRMVVQQGNGGSDSPSSSNGNGAGTNQNLVQDGSFRFLMGGGGVQGESTLWENYGLRLNNGEQN 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 892437 894631 + Conep10aG0018800.1 Cone10ag0183 445981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0183 532 CDD GT1 134 199 - -
Cone10ag0183 532 Pfam Myb/SANT-like DNA-binding domain 134 220 IPR044822 -
Cone10ag0183 532 ProSiteProfiles Myb-like domain profile. 127 192 IPR001005 -
Cone10ag0183 532 MobiDBLite consensus disorder prediction 242 261 - -
Cone10ag0183 532 MobiDBLite consensus disorder prediction 275 297 - -
Cone10ag0183 532 MobiDBLite consensus disorder prediction 470 497 - -
Cone10ag0183 532 Coils Coil 322 349 - -
Cone10ag0183 532 PANTHER FI21293P1 81 416 - -
Cone10ag0183 532 Gene3D - 135 197 - -
Cone10ag0183 532 FunFam trihelix transcription factor PTL-like 135 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0183 Cone-Chr10:892437 Cone12ag0575 Cone-Chr12:4259062 1.32E-39 dispersed
Cone10ag0183 Cone-Chr10:892437 Cone13ag1208 Cone-Chr13:9331074 1.27E-74 wgd
Cone10ag0183 Cone-Chr10:892437 Cone19ag1193 Cone-Chr19:8355133 9.95E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44159 PF13041 PPR_2 6.70E-09 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0183 - - - 0.0