Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0192 ATGGATTGCCATTGGAATGAAAACTGCACCAACAGTATCAGCAGCTTAAGGTCTAATTTTAGCATAACTCGACCCCCTGAATCTTCTTTTAACTTCCTCTACAATCCCAACTTCGATCCGTTTTCCCATTCACAAGGGATAGACATGAAGCATCCAGCAATGGCGGGAGCAGACACGCTGCAAGCTATAGTTCCAGGAATAATGGAAAGAAACCTGATGATGAACTCGTGTGGCAATAACAACAATAGTTTTGATAATAGTATGGATCATAAGAAGAAGAGATTGAGTAGTGAACAGTTAGAATCATTAGAGAGGAGTTTCCAGGAAGAGATTAAGCTTGATCCAGACAGGAAAATGAAGCTGTCCAAAGATCTCGGACTTCAGCCGAGGCAGATCGCTGTTTGGTTCCAAAACCGACGCGCTAGATGGAAGGCGAAGCAGCTAGAACGCCTTTATGATTCACTCAAACAAGAGTATGACAGCATGTCTAGAGAAAAACAAAAGCTTCAAGAAGAGGTGCTGAAATTGAAAAATGTGTTAAGAGAGCAAACATCAAGGAATCAAATATCGGCAGTTTATACGGACATGTCCGGTGAAGAAACGGTAGAGAGCACATCGGGTGGGATGATGAACCGAAGTTGTAATAATCATGTTAAGGCAAGAGGGAATAGTCTTAATGATCATAACAGTAATAGTAATATGAACGGTGATCAATGCAACTATGGGATTTTTAATGCAGAGGATTATAACCCAATATCTCCTCCACCATTCTGGGCTGCGCAGTTCCCTAATCCTAATTACATTTAG 807 41.26 MDCHWNENCTNSISSLRSNFSITRPPESSFNFLYNPNFDPFSHSQGIDMKHPAMAGADTLQAIVPGIMERNLMMNSCGNNNNSFDNSMDHKKKRLSSEQLESLERSFQEEIKLDPDRKMKLSKDLGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQEYDSMSREKQKLQEEVLKLKNVLREQTSRNQISAVYTDMSGEETVESTSGGMMNRSCNNHVKARGNSLNDHNSNSNMNGDQCNYGIFNAEDYNPISPPPFWAAQFPNPNYI 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 952016 953401 + Conep10aG0019800.1 Cone10ag0192 445990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0192 268 FunFam Putative homeobox-leucine zipper protein ATHB-51 88 151 - -
Cone10ag0192 268 Coils Coil 138 186 - -
Cone10ag0192 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 83 224 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone10ag0192 268 Gene3D - 90 150 - -
Cone10ag0192 268 Pfam Homeodomain 91 144 IPR001356 GO:0003677(InterPro)
Cone10ag0192 268 SUPERFAMILY Homeodomain-like 74 148 IPR009057 -
Cone10ag0192 268 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone10ag0192 268 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677(InterPro)
Cone10ag0192 268 Pfam Homeobox associated leucine zipper 146 180 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0192 268 CDD homeodomain 91 147 IPR001356 GO:0003677(InterPro)
Cone10ag0192 268 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677(InterPro)
Cone10ag0192 268 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677(InterPro)
Cone10ag0192 268 SMART HOX_1 88 150 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0192 Cone-Chr10:952016 Cone2ag0135 Cone-Chr2:717434 1.25E-21 dispersed
Cone10ag0192 Cone-Chr10:952016 Cone3ag0210 Cone-Chr3:1128454 7.04E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44160 PF13844 Glyco_transf_41 7.20E-23 CL0113 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0192 - - - 0.0