Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone10ag0215 | ATGCCAATTCGGAACATCGCCGTCGGTAGCTACGAGGAGGCGGCTCACCCTGACGCTCTAAGGGCGGCGTTAGCTGAGTTCATTTCCACTCTTATCTTCGTTTTCGCCGGCGAAGGTTCTGGCATGGCCTTCAACTTCCTTACTAGTGACGGCTCAACCACACCGGCCGGCCTTGTCGCCGCAGCTCTCGCACACGCTTTCGGTCTTTTCGTTGCCGTCTCCATCGCCGCTAACATCTCCGGCGGCCACGTGAACCCTGCTGTCACCTTCGGCGCCTTCCTCGGCGGCAACATCACTCTCCTACGTGGCATTCTGTACTGGATCGCTCAGCTTCTTGGATCCACCGCCGCTTGCTTGCTTCTTAAGTTCGCCACTAACGGCCAGACCACCTCAGCTTTCGCTCTATCGTCAGGAGTTGGAGTATGGAACGCCTTCGTTTTGGAGATAGTCATGACATTCGGATTGGTGTACACAGTCTACGCAACAGCCATTGACCCGAAGAAGGGAAATATCGGAATTATAGCTCCGATCGCAATTGGTTTCATCGTGGGTGCTAATATCTTAGCCGGCGGGGCATTCGACGGGGCCTCAATGAACCCGGCCGTATCATTCGGGCCAGCCTTGGTGAGCTGGAACTGGACGAACCAATGGGTATACTGGGCCGGTCCATTGGTTGGCGGTGGGCTAGCAGGTCTAGTCTACGAGTTCGTCTTTATCAATCAGACCCACGAGCAGCTTCCCTCTACTGACTTTTAA | 756 | 55.29 | MPIRNIAVGSYEEAAHPDALRAALAEFISTLIFVFAGEGSGMAFNFLTSDGSTTPAGLVAAALAHAFGLFVAVSIAANISGGHVNPAVTFGAFLGGNITLLRGILYWIAQLLGSTAACLLLKFATNGQTTSAFALSSGVGVWNAFVLEIVMTFGLVYTVYATAIDPKKGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWNWTNQWVYWAGPLVGGGLAGLVYEFVFINQTHEQLPSTDF | 251 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1051557 | 1052834 | + | Conep10aG0022100.1 | Cone10ag0215 | 446013 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone10ag0215 | 251 | CDD | MIP | 21 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0215 | 251 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
| Cone10ag0215 | 251 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0215 | 251 | PRINTS | Major intrinsic protein family signature | 180 | 202 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0215 | 251 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0215 | 251 | PRINTS | Major intrinsic protein family signature | 217 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0215 | 251 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0215 | 251 | PRINTS | Major intrinsic protein family signature | 147 | 165 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0215 | 251 | Gene3D | Glycerol uptake facilitator protein. | 4 | 251 | IPR023271 | - | |
| Cone10ag0215 | 251 | Pfam | Major intrinsic protein | 15 | 234 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0215 | 251 | PANTHER | AQUAPORIN-8 | 5 | 247 | IPR034294 | GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
| Cone10ag0215 | 251 | SUPERFAMILY | Aquaporin-like | 13 | 245 | IPR023271 | - | |
| Cone10ag0215 | 251 | FunFam | Probable aquaporin TIP1-1 | 4 | 251 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0215 | Cone-Chr10:1051557 | Cone1ag0665 | Cone-Chr1:6272582 | 1.90E-143 | dispersed | |
| Cone17ag1120 | Cone-Chr17:8302366 | Cone10ag0215 | Cone-Chr10:1051557 | 3.70E-83 | transposed | |
| Cone10ag0215 | Cone-Chr10:1051557 | Cone3ag0242 | Cone-Chr3:1297684 | 6.12E-174 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone10ag0215 | K09873 | - | cit:102630124 | 405.216 |