Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0217 ATGTTTCTCTGTCCTCCAGCAAAGATGCTGTGCAGTACCTACATTGTGCTACTTTCGGTTTTTCTGACCTCGACTACTCACATGGGTTTATCCACATTCAATCTTACTCTTCCGGGTCAACATCCGAACCCGGATCAAGTTGTTCAACAAGTTCACAGGATGGTAAACGCATCACTAACAAGAAGAAAAATGTTCCAAGAATCAGCTCAACAAAGCGAGACCTCCTGCCTGACTGGAAACCCAATAGACGACTGCTGGAAGTGTGACCCGGATTGGCCCAACTACCGCCAAAGGCTAGCCGACTGTGTAATCGGGTTCGGCCAACATGCACTCGGGGGCAAAAATGGCGAATACTACATCGTCACAGATGACTCAGACGACGATGCAGTCAATCCCAAACCAGGCACATTACGATACGCAGTGATTCAGACAGTACCTTTGTGGATCGTTTTCCCGAGTAACATGCTAATCAAGCTCTCTCAAGAGCTGATTTTTAACAGCTACAAAACCCTAGATGGTAGGGGAGCCAATGTGCATATTGTTGGTGGTGGGTGCATAACATTGCAGTATATAAGCAATGTCATCATACACAACATCCATATCCATCATTGTTATCAATCTGGCGATACTTTGGTGCGTTCAAGTCCAACCCATTATGGGTACCGGACAAAATCAGACGGTGACGGGATCTCCATCTTCGGTTCGACAGACATATGGATTGATCACTGTTCACTTTCGCACTGCAAAGACGGTTTGATAGATGCAGTGATGGGGTCTACGGGGATAACGATATCGAACAACTATTTCTCGCATCATGATGAGGTCATGTTGTTGGGCCACAGTGATAGGTACCTGCCCGATTCGGGAATGCAAGTGACGATAGCATTCAACCATTTCGGAGAGAAGCTCGTGCAGAGGATGCCTAGATGCCGACGGGGATATATTCATGTCGTGAACAACGACTTTACGCAGTGGGAAATGTATGCTATTGGTGGGAGTGGTAACCCTACTATCAATAGTCAGGGTAACCGTTACACCGCTCCTTCTAACCGTAACGCTAAGGAGGTGACGAAGAGGGTGGACACAGGGGAGAGTGAATGGAGGGGGTGGAACTGGCGGTCGGAGGGAGATATACTGGTAAACGGTGCGTTTTTCGTGGCGTCCGGTGAAGGTTTAGAGGTTAAGTATGAGAAAGCATATAGTGTTGAGCCTAAGTCAGCTGCGCTTATTGACCTCCTCACCATGCACTCCGGCCCCCTTGGAGTTGGTGGCAGGGACAACAACGTGGGAATGTGGAGCAGAGGACCCGACACGGGTGGAACTGGACTCATGCAAGGCCCAGATTTTACAGACGATATGTCGGGAAGCAAGAAGCATCTTATACCGTTGTCTACTACCATGTTCATGTCCCTCTGTCATATTCTTACTCTGCTATCCTTTCTCATTCCCATTGAAGTCCAATAA 1464 47.95 MFLCPPAKMLCSTYIVLLSVFLTSTTHMGLSTFNLTLPGQHPNPDQVVQQVHRMVNASLTRRKMFQESAQQSETSCLTGNPIDDCWKCDPDWPNYRQRLADCVIGFGQHALGGKNGEYYIVTDDSDDDAVNPKPGTLRYAVIQTVPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYQSGDTLVRSSPTHYGYRTKSDGDGISIFGSTDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDRYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSNRNAKEVTKRVDTGESEWRGWNWRSEGDILVNGAFFVASGEGLEVKYEKAYSVEPKSAALIDLLTMHSGPLGVGGRDNNVGMWSRGPDTGGTGLMQGPDFTDDMSGSKKHLIPLSTTMFMSLCHILTLLSFLIPIEVQ 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1059074 1061483 + Conep10aG0022300.1 Cone10ag0217 446015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0217 487 Pfam Pectate lyase 164 343 IPR002022 -
Cone10ag0217 487 PANTHER PECTATE LYASE 18-RELATED 26 422 IPR045032 GO:0030570(InterPro)
Cone10ag0217 487 FunFam Pectate lyase 79 421 - -
Cone10ag0217 487 SUPERFAMILY Pectin lyase-like 73 393 IPR011050 -
Cone10ag0217 487 PRINTS Pollen allergen Amb family signature 370 394 IPR018082 -
Cone10ag0217 487 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Cone10ag0217 487 PRINTS Pollen allergen Amb family signature 399 422 IPR018082 -
Cone10ag0217 487 PRINTS Pollen allergen Amb family signature 162 178 IPR018082 -
Cone10ag0217 487 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Cone10ag0217 487 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
Cone10ag0217 487 PRINTS Pollen allergen Amb family signature 126 151 IPR018082 -
Cone10ag0217 487 PRINTS Pollen allergen Amb family signature 226 247 IPR018082 -
Cone10ag0217 487 Gene3D - 79 421 IPR012334 -
Cone10ag0217 487 SMART amb_all 154 351 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0217 Cone-Chr10:1059074 Cone5ag0370 Cone-Chr5:1575229 1.03E-220 dispersed
Cone1ag0495 Cone-Chr1:4834236 Cone10ag0217 Cone-Chr10:1059074 5.54E-50 wgd
Cone10ag0217 Cone-Chr10:1059074 Cone11ag1037 Cone-Chr11:8205776 5.24E-218 wgd
Cone10ag0217 Cone-Chr10:1059074 Cone18ag0538 Cone-Chr18:2654646 1.85E-209 wgd
Cone10ag0217 Cone-Chr10:1059074 Cone3ag0244 Cone-Chr3:1304395 0 wgd
Cone10ag0217 Cone-Chr10:1059074 Cone5ag1260 Cone-Chr5:6004920 1.77E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0217 K01728 - csv:101203012 777.319