Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag0217 | ATGTTTCTCTGTCCTCCAGCAAAGATGCTGTGCAGTACCTACATTGTGCTACTTTCGGTTTTTCTGACCTCGACTACTCACATGGGTTTATCCACATTCAATCTTACTCTTCCGGGTCAACATCCGAACCCGGATCAAGTTGTTCAACAAGTTCACAGGATGGTAAACGCATCACTAACAAGAAGAAAAATGTTCCAAGAATCAGCTCAACAAAGCGAGACCTCCTGCCTGACTGGAAACCCAATAGACGACTGCTGGAAGTGTGACCCGGATTGGCCCAACTACCGCCAAAGGCTAGCCGACTGTGTAATCGGGTTCGGCCAACATGCACTCGGGGGCAAAAATGGCGAATACTACATCGTCACAGATGACTCAGACGACGATGCAGTCAATCCCAAACCAGGCACATTACGATACGCAGTGATTCAGACAGTACCTTTGTGGATCGTTTTCCCGAGTAACATGCTAATCAAGCTCTCTCAAGAGCTGATTTTTAACAGCTACAAAACCCTAGATGGTAGGGGAGCCAATGTGCATATTGTTGGTGGTGGGTGCATAACATTGCAGTATATAAGCAATGTCATCATACACAACATCCATATCCATCATTGTTATCAATCTGGCGATACTTTGGTGCGTTCAAGTCCAACCCATTATGGGTACCGGACAAAATCAGACGGTGACGGGATCTCCATCTTCGGTTCGACAGACATATGGATTGATCACTGTTCACTTTCGCACTGCAAAGACGGTTTGATAGATGCAGTGATGGGGTCTACGGGGATAACGATATCGAACAACTATTTCTCGCATCATGATGAGGTCATGTTGTTGGGCCACAGTGATAGGTACCTGCCCGATTCGGGAATGCAAGTGACGATAGCATTCAACCATTTCGGAGAGAAGCTCGTGCAGAGGATGCCTAGATGCCGACGGGGATATATTCATGTCGTGAACAACGACTTTACGCAGTGGGAAATGTATGCTATTGGTGGGAGTGGTAACCCTACTATCAATAGTCAGGGTAACCGTTACACCGCTCCTTCTAACCGTAACGCTAAGGAGGTGACGAAGAGGGTGGACACAGGGGAGAGTGAATGGAGGGGGTGGAACTGGCGGTCGGAGGGAGATATACTGGTAAACGGTGCGTTTTTCGTGGCGTCCGGTGAAGGTTTAGAGGTTAAGTATGAGAAAGCATATAGTGTTGAGCCTAAGTCAGCTGCGCTTATTGACCTCCTCACCATGCACTCCGGCCCCCTTGGAGTTGGTGGCAGGGACAACAACGTGGGAATGTGGAGCAGAGGACCCGACACGGGTGGAACTGGACTCATGCAAGGCCCAGATTTTACAGACGATATGTCGGGAAGCAAGAAGCATCTTATACCGTTGTCTACTACCATGTTCATGTCCCTCTGTCATATTCTTACTCTGCTATCCTTTCTCATTCCCATTGAAGTCCAATAA | 1464 | 47.95 | MFLCPPAKMLCSTYIVLLSVFLTSTTHMGLSTFNLTLPGQHPNPDQVVQQVHRMVNASLTRRKMFQESAQQSETSCLTGNPIDDCWKCDPDWPNYRQRLADCVIGFGQHALGGKNGEYYIVTDDSDDDAVNPKPGTLRYAVIQTVPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYQSGDTLVRSSPTHYGYRTKSDGDGISIFGSTDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDRYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSNRNAKEVTKRVDTGESEWRGWNWRSEGDILVNGAFFVASGEGLEVKYEKAYSVEPKSAALIDLLTMHSGPLGVGGRDNNVGMWSRGPDTGGTGLMQGPDFTDDMSGSKKHLIPLSTTMFMSLCHILTLLSFLIPIEVQ | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1059074 | 1061483 | + | Conep10aG0022300.1 | Cone10ag0217 | 446015 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag0217 | 487 | Pfam | Pectate lyase | 164 | 343 | IPR002022 | - | |
Cone10ag0217 | 487 | PANTHER | PECTATE LYASE 18-RELATED | 26 | 422 | IPR045032 | GO:0030570(InterPro) | |
Cone10ag0217 | 487 | FunFam | Pectate lyase | 79 | 421 | - | - | |
Cone10ag0217 | 487 | SUPERFAMILY | Pectin lyase-like | 73 | 393 | IPR011050 | - | |
Cone10ag0217 | 487 | PRINTS | Pollen allergen Amb family signature | 370 | 394 | IPR018082 | - | |
Cone10ag0217 | 487 | PRINTS | Pollen allergen Amb family signature | 328 | 347 | IPR018082 | - | |
Cone10ag0217 | 487 | PRINTS | Pollen allergen Amb family signature | 399 | 422 | IPR018082 | - | |
Cone10ag0217 | 487 | PRINTS | Pollen allergen Amb family signature | 162 | 178 | IPR018082 | - | |
Cone10ag0217 | 487 | PRINTS | Pollen allergen Amb family signature | 306 | 325 | IPR018082 | - | |
Cone10ag0217 | 487 | PRINTS | Pollen allergen Amb family signature | 102 | 119 | IPR018082 | - | |
Cone10ag0217 | 487 | PRINTS | Pollen allergen Amb family signature | 126 | 151 | IPR018082 | - | |
Cone10ag0217 | 487 | PRINTS | Pollen allergen Amb family signature | 226 | 247 | IPR018082 | - | |
Cone10ag0217 | 487 | Gene3D | - | 79 | 421 | IPR012334 | - | |
Cone10ag0217 | 487 | SMART | amb_all | 154 | 351 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0217 | Cone-Chr10:1059074 | Cone5ag0370 | Cone-Chr5:1575229 | 1.03E-220 | dispersed | |
Cone1ag0495 | Cone-Chr1:4834236 | Cone10ag0217 | Cone-Chr10:1059074 | 5.54E-50 | wgd | |
Cone10ag0217 | Cone-Chr10:1059074 | Cone11ag1037 | Cone-Chr11:8205776 | 5.24E-218 | wgd | |
Cone10ag0217 | Cone-Chr10:1059074 | Cone18ag0538 | Cone-Chr18:2654646 | 1.85E-209 | wgd | |
Cone10ag0217 | Cone-Chr10:1059074 | Cone3ag0244 | Cone-Chr3:1304395 | 0 | wgd | |
Cone10ag0217 | Cone-Chr10:1059074 | Cone5ag1260 | Cone-Chr5:6004920 | 1.77E-51 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag0217 | K01728 | - | csv:101203012 | 777.319 |