Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone10ag0226 | ATGTCACAAGATTCCGAGGAGGTAAAGACGAGTGAGGAACAGTGGAAGTGGTCTGAAATTCGAGGGCTCGAGTTAATGTCTTCTTCCTCGCCATATCAGCAAGAAGACCAAGCAACTGTTGAGGTAGGAACAAACAGAGGAGCTGAAATGGGGAGCTCTGAGTCGGACAAGACGAAGAAGATGAGCAAGGATGAAGCTGTTCCTTCGGTTGGGTTTTCTCAACTGTTCAGATTCGCAGATGGGTTGGATCTTATTTTAATGGCGGTTGGATCAATCGGAGCTTTTGTCCATGGCTGCTCTCTTCCTCTGTTTCTTCGCTTCTTTGCTGATCTCGTTAACTCTTTTGGGTCCAATTCGAATGACGTGGATAAAATGATGCACGAAGTGCTGAAGTATGCGTTTTACTTTCTTGTGGTTGGAGGTGCGATTTGGGCCTCATCATGGGCCGAGATAGCCTGCTGGATGTGGACGGGAGAGCGACAGTCCACCAAGATGAGAATCAAGTATCTTGAGGCAGCTTTGAATCAAGACATTCAGTTTTTTGACACAGAAGTTAGAACTTCAGATGTTATTTTCGCCATTAATTCTGATGCTGTCTTGGTCCAAGACGCCATTAGTGAAAAGTTGGGGAATTTTATACATTATATGGCAACATTTGTTGCTGGATTTGTAGTGGGTTTCACAGCAATCTGGCAATTGGCGTTAGTCACTCTTGCTGTGGTTCCTCTTATTGCTGTAATTGGAGCCATTTACACTACCACTTCAGCCAAGCTCTCTTCCAAGAGCCAGGACGCTCTTTCTCAAGCCGGAAACATTGTAGAACAGACAATAGTTCAAATCCGGGTTGTTTATGCATTTGCCGGAGAATCTAAATCCCTACAAGGGTACTCCTCAGCATTGAAAATCGCCCAAAGAATCGGTTACAAGAGTGGTTTAGCAAAAGGAATGGGACTAGGAGCAACTTACTTTGTTGTTTTCTGTTGCTACGCTCTTCTTCTTTGGTACGGTGGTTACCTTGTACGACATCATAACACCAATGGTGGTCTTGCCCTATCCACCATGTTTGCCGTTATGATAGGTGGACTGGCATTGGGACAATCAGCTCCAAGCATGGGTGCATTTGCAAAAGCAAAAGTTGCAGCTGCGAAAATTTACCGGATAATTGATCATAAGCGAGAAATCGATAGGAATAGTGAATCCGGTTTGGAATTGGAATCAGTAACAGGATTAGTTGAGCTAAAAAGTGTAGATTTCTCATACCCATCAAGGCCGGAGGTTAAAATTCTCAATAATTTCTCACTAACAATTCCAGCCGGAAAGACAATAGCTTTAGTCGGAAGCAGTGGGTCCGGTAAGAGCACTGTGGTCTCCCTCATAGAGAGATTCTACGACCCCACCTCAGGACAAGTTTTGTTAGATGGACATGACATTAAGTTGTTGAAGTTAAGGTGGTTGAGGCAACAGATTGGGCTTGTTAGTCAAGAACCAGCTCTTTTCGCCACAACCATTAAAGAGAATATTCTTTTTGGTCGACCTGAAGCTGACCTAGTCCAGATCGAAGAAGCTGCTAGAGTGGCTAATGCCCATTCCTTCATCATCAAACTTCCTGATGGCTATGACACTCAGGTAGGGGAAAGAGGATTGCAGCTTTCGGGTGGGCAGAAGCAGAGGATTGCTATAGCAAGAGCAATGTTGAAAAATCCGGCGATTTTGCTTTTAGACGAGGCAACTAGTGCATTGGACTCTGAGTCTGAAAAGCTGGTCCAAGAGGCCCTTGACCGGTTTATGATCGGAAGGACCACTCTAGTCATTGCCCATCGCCTTTCTACAATCAGAAAAGCCGATCTCGTAGCCATAATTCAACAAGGGAGTGTTTCCGAAATCGGAACCCATGATGACCTCTTTGCCAAAGGCGAGCATGGAGTCTATGCCAAGCTTATCCGAATGCAAGAGACCGCCAACGAAAATGCCCTCAACAATGCTAGAAAGAGTAGTGCAAGGCCTTCAAGTGCAAGGAACTCATTAAGTTCACCCATAATAGCACGAAACTCCTCTTATGGAAGATCACCATATTCACGTCGATTATCAGATTTCTCCACTTCGGATTTTACTCTGTCTATTGATGGACCACACCCTTACCGGCTCGAAAAGCTTCCATTCAAGGAGCAAGCTAGTTCCTTCTGGCGCCTGGCGAAACTTAACAAACCTGAATGGATCTATGCTCTAATCGGTTCTATCGGCTCTATCATTTGTGGCTCACTAAGCGCTTTCTTTGCGTACGTTCTAAGTGCCGTTCTTAGTGTCTACTACAACCAAAACAATGCTTACATGATCCGAGAAATAAACAAGTACTGCTATTTACTAATTGGGCTTTCCTCGGCTGCTCTTCTATTCAATACTCTTCAACATTTCTTTTGGGACATAGTGGGAGAAAACCTTACGAAACGGGTAAGGGAGAAAATGCTGGCTTCGGTTCTTAAGAATGAGATGGCGTGGTTTGATAAGGAGGAGAATGAGAGTGCTAGAATCGCTTCTAGGCTTGCACTTGACGCACACAATGTCCGGTCAGCAATAGGGGATCGAATTTCTGTGATTGTTCAGAACACAGCTCTTATGCTAGTTGCTTGCACTGCTGGGTTTGTTTTGCAATGGCGCCTTGCCCTTGTTCTTGTTGCTGTCTTTCCACTAGTTGTTGCAGCAACTGTCCTGCAGAAAATGTTCATGACGGGTTTCTCTGGAGATCTTGAAGGAGCTCATGCTAAGGCTACACAATTAGCTGGAGAGGCTATTGCCAATGTAAGGACTGTTGCTGCTTTTAATGCGGAGGGAAAAGTTGGAGCACTTTTTGCTTCAAATCTTGAAATCCCGTTACGACGTTGCTTTTGGAAGGGACAAATTGCTGGTAGTGGATATGGGATTGCCCAATTCTTGCTCTATGCTTCTTATGCTTTAGGCCTTTGGTATGCTTCTTGGCTTGTAAAGCATGGGATCTCGGATTTCTCGAAAACCATTCGGGTTTTCATGGTCCTCATGGTTTCTGCTAATGGAGCGGCTGAAACCCTGACCCTAGCTCCCGATTTCATCAAAGGTGGTCGTGCCATGCGTTCAGTTTTCGACCTTCTAGACCGGAAAACTGAGATCGAACCAGACGATTTAGACGCTGCCCCAGTTCCTGAAAAGCTTCAAGGGGAAGTTGAATTAAAGCATGTAGACTTTTCCTACCCTACTCGCCCCGACATCCCGGTTTTCCGAGACCTCACTCTGCGGGCTCGAGCAGGGAAGACGCTCGCCCTTGTGGGCCCGAGCGGGTGTGGGAAGAGCTCGGTCATTTCACTCATCCAACGATTCTACGAACCCACATCTGGAAGAGTTATGATCGACGGGAAGGACATTAGAAAATACAACCTCAAGTCGTTAAGGAAACACATTGCGATAGTACCTCAAGAGCCGTGCCTCTTTGCTGCAACAATATACGAAAACATTGCTTATGGTCACGAATCGAAAGAAGCCACTGAGGCTGAAATCATTGAAGCTTCTACTCTAGCCAATGCCCACAAATTCATATCTTCATTGCCCGAAGGATACAAGACATTTGTCGGAGAGAGAGGGGTTCAATTATCGGGCGGACAGAAACAGAGGATCGCAATAGCTCGTGCTCTAGTTCGAAGAGCAGAGATCATGCTTCTAGACGAAGCAACTAGTGCACTTGATGTTGAGTCTGAGAAATCGGTCCAAGAAGCTCTGGACAGCGCTTGCTCAGGAAAAACCACCATTGTCGTCGCTCATAGGCTATCAACTGTAAGGAACGCACATGTTATTGCAGTGATTGATGACGGAAAAGTTGCAGAGCAAGGATCGCATTCACATTTGTTGAAAAACTATCCCGATGGCTGCTATGCTCGGATGATACAGTTACAAAGGCTGACGCACGGTCAGCAAGTGATTGGAATGGGTATGGGTTCAACCTCGTCAGGAAGAACCAGAGAAGATTATGATAGAGAAAGCTAG | 4008 | 45.56 | MSQDSEEVKTSEEQWKWSEIRGLELMSSSSPYQQEDQATVEVGTNRGAEMGSSESDKTKKMSKDEAVPSVGFSQLFRFADGLDLILMAVGSIGAFVHGCSLPLFLRFFADLVNSFGSNSNDVDKMMHEVLKYAFYFLVVGGAIWASSWAEIACWMWTGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVIFAINSDAVLVQDAISEKLGNFIHYMATFVAGFVVGFTAIWQLALVTLAVVPLIAVIGAIYTTTSAKLSSKSQDALSQAGNIVEQTIVQIRVVYAFAGESKSLQGYSSALKIAQRIGYKSGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHNTNGGLALSTMFAVMIGGLALGQSAPSMGAFAKAKVAAAKIYRIIDHKREIDRNSESGLELESVTGLVELKSVDFSYPSRPEVKILNNFSLTIPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKLLKLRWLRQQIGLVSQEPALFATTIKENILFGRPEADLVQIEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAIIQQGSVSEIGTHDDLFAKGEHGVYAKLIRMQETANENALNNARKSSARPSSARNSLSSPIIARNSSYGRSPYSRRLSDFSTSDFTLSIDGPHPYRLEKLPFKEQASSFWRLAKLNKPEWIYALIGSIGSIICGSLSAFFAYVLSAVLSVYYNQNNAYMIREINKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLASVLKNEMAWFDKEENESARIASRLALDAHNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPLVVAATVLQKMFMTGFSGDLEGAHAKATQLAGEAIANVRTVAAFNAEGKVGALFASNLEIPLRRCFWKGQIAGSGYGIAQFLLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDLDAAPVPEKLQGEVELKHVDFSYPTRPDIPVFRDLTLRARAGKTLALVGPSGCGKSSVISLIQRFYEPTSGRVMIDGKDIRKYNLKSLRKHIAIVPQEPCLFAATIYENIAYGHESKEATEAEIIEASTLANAHKFISSLPEGYKTFVGERGVQLSGGQKQRIAIARALVRRAEIMLLDEATSALDVESEKSVQEALDSACSGKTTIVVAHRLSTVRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRLTHGQQVIGMGMGSTSSGRTREDYDRES | 1335 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1108440 | 1113203 | + | Conep10aG0023200.1 | Cone10ag0226 | 446024 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone10ag0226 | 1335 | ProSitePatterns | ABC transporters family signature. | 1206 | 1220 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone10ag0226 | 1335 | SMART | AAA_5 | 438 | 624 | IPR003593 | GO:0016887(InterPro) | |
| Cone10ag0226 | 1335 | SMART | AAA_5 | 1092 | 1286 | IPR003593 | GO:0016887(InterPro) | |
| Cone10ag0226 | 1335 | Pfam | ABC transporter | 429 | 578 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone10ag0226 | 1335 | SUPERFAMILY | ABC transporter transmembrane region | 729 | 1049 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0226 | 1335 | SUPERFAMILY | ABC transporter transmembrane region | 75 | 389 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0226 | 1335 | FunFam | ABC transporter B family member 1 | 401 | 651 | - | - | |
| Cone10ag0226 | 1335 | Pfam | ABC transporter transmembrane region | 743 | 1012 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone10ag0226 | 1335 | Pfam | ABC transporter transmembrane region | 90 | 360 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone10ag0226 | 1335 | Gene3D | ABC transporter type 1, transmembrane domain | 1031 | 1309 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0226 | 1335 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 402 | 650 | IPR027417 | - | |
| Cone10ag0226 | 1335 | MobiDBLite | consensus disorder prediction | 26 | 63 | - | - | |
| Cone10ag0226 | 1335 | FunFam | ABC transporter B family member 19 | 1031 | 1053 | - | - | |
| Cone10ag0226 | 1335 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 88 | 376 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone10ag0226 | 1335 | MobiDBLite | consensus disorder prediction | 1315 | 1335 | - | - | |
| Cone10ag0226 | 1335 | Gene3D | ABC transporter type 1, transmembrane domain | 74 | 663 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0226 | 1335 | CDD | ABC_MTABC3_MDL1_MDL2 | 1065 | 1306 | - | - | |
| Cone10ag0226 | 1335 | PANTHER | ABC TRANSPORTER B FAMILY | 52 | 683 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cone10ag0226 | 1335 | Pfam | ABC transporter | 1084 | 1234 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone10ag0226 | 1335 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 731 | 1047 | - | - | |
| Cone10ag0226 | 1335 | FunFam | ABC transporter B family member 1 | 721 | 1030 | - | - | |
| Cone10ag0226 | 1335 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1057 | 1306 | IPR027417 | - | |
| Cone10ag0226 | 1335 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1065 | 1303 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone10ag0226 | 1335 | FunFam | ABC transporter B family member 1 | 1055 | 1307 | - | - | |
| Cone10ag0226 | 1335 | Gene3D | ABC transporter type 1, transmembrane domain | 722 | 1030 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0226 | 1335 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 87 | 371 | - | - | |
| Cone10ag0226 | 1335 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 411 | 647 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone10ag0226 | 1335 | ProSitePatterns | ABC transporters family signature. | 550 | 564 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone10ag0226 | 1335 | Gene3D | - | 401 | 651 | IPR027417 | - | |
| Cone10ag0226 | 1335 | Gene3D | - | 1054 | 1307 | IPR027417 | - | |
| Cone10ag0226 | 1335 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 742 | 1029 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone10ag0226 | 1335 | MobiDBLite | consensus disorder prediction | 26 | 51 | - | - | |
| Cone10ag0226 | 1335 | FunFam | ABC transporter B family member 1 | 74 | 409 | - | - | |
| Cone10ag0226 | 1335 | CDD | ABC_MTABC3_MDL1_MDL2 | 411 | 650 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0226 | Cone-Chr10:1108440 | Cone16ag0856 | Cone-Chr16:9101076 | 0 | dispersed | |
| Cone10ag0226 | Cone-Chr10:1108440 | Cone13ag1253 | Cone-Chr13:9519558 | 0 | wgd | |
| Cone10ag0226 | Cone-Chr10:1108440 | Cone16ag0217 | Cone-Chr16:1489691 | 7.22E-100 | wgd | |
| Cone10ag0226 | Cone-Chr10:1108440 | Cone19ag1238 | Cone-Chr19:8534464 | 0 | wgd | |
| Cone10ag0226 | Cone-Chr10:1108440 | Cone3ag0257 | Cone-Chr3:1355665 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone10ag0226 | K05658 | - | rcu:8284004 | 2186.38 |