Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0249 ATGATTACATTTATGGAGTCAAAGGAGAAATCAAAAGACGCAGATAATAAAAGCTTGGACCCTTCATTGTGGCATGCTTGTGCTGGAGGAATGGTCCAAATGCCACAAGTTAGCTCCAATGTCTTCTACTTCCCTCAAGGCCATGCCGAGCACTCAGGTGCGCCCATTCATTTCCGGAATTTCCCGAAAATTCCGCCATTTTTCATATGTAAAGCATCCTCCATCACCTTCATGGCTGATCTCGAAACAGACGAGGTTTACTCGAAAATTAGTTTAGTTCCTTTAAGTGGAAAAGAACTCGAATTTGAAGACAATAGAGTTGGTTTGATTAATGAATCGGAATTACAAGACAACCCAGCTTCTTTCGCAAAGACATTGACTCAATCGGATGCAAACAACGGAGGGGGCTTCTCGGTCCCTCGTTATTGTGCCGAAACGATATTTCCGCGCTTGGATTACACCGCTGATCCTCCAGTTCAGACAATCCTTGCTAAGGATGTCCATGGCAAGACATGGAAATTCCGACACATTTATCGTGGGACACCACGGAGGAATCTATTGACGACTGGGTGGAGTAATTTCGTGAACCAGAAGAAACTTGTTGCCGGGGACTCTATCATCTTTTTACGGGCTGAAAACGGGGATTTGTGTGTTGGAATTCGTCGTGCAAAAAGGGGTCTTGGTATTGGGGATGTGCATGGAGAATCTTCATCTGGGTGGAAACCGATAGGAGGATTCTCCCCATCTTTAAGTAACAGGTTGGGCTCGAATGGTAGTGGTGGTGGTGGGCCGATATGTACGGGAAAAGTGAGGCCAGAATCAGTTATTGAAGCGGTTACTCTGGCCATGAATAAAGAACCGTTTGAGGTTGTTTACTACCCTCGGGCTAGCACTTCTGAGTTTTGTGTCAAGGCGTCGTTAGTGAAGGCAGCATTGCAGGTCCCGTGGGGATCGGGTTTGAGGTTTAAGATGCCATTTGAAACTGAAGACTCTTCCCGGATTAGTTGGTTCATGGGAACCATATCATCTGTTCAAGTTGCCGATCCTGTTTTCTGGCCAGACTCGCCTTGGCAGCTACTTCAGGTTACGTGGGACGAGCCTGATTTACTTCAGCACGTAAAACGAGTAAACCCCTGGCTAGTTGAGTTAGTATCAAACATGCCAGCCCTTGACCTGTCCCCATTTCCACCTTCAAGGAAAAAACTAAGGTTGCCTCAATACCCTGAGTTGGCTCTCAACCCGACAAGTTACACTAATTTCCTTGGGGATGGGGGTCAATTTAATTGTAGGCCGGATAACAACACTCCTTCTGGCATGCAGGGAGCCAAGCATGGTCATTATGATCTATCCTTACCCGATCTCTCCCTCGGTAAATTTCAGTTGGACCCTTTACTAGTTAGTTACTCCCCACCGAAATTAGTTCCTCAAAATCCATTAGAGCATTCTAAGCAAGATTCAAAGAATCCGGAAGATGTCAGGGAACCAAGGATCATATTGTTCGGGAAGTTGATATCGACGGAGCAACAAATCTCATTGAGCTGCTCTGGTGGGACTGGGAATAGTTCATCAGATGGAAATGTGGAATCAGAGCAGCAGGTTTCGGAGGAAACAAGTTAG 1617 46.01 MITFMESKEKSKDADNKSLDPSLWHACAGGMVQMPQVSSNVFYFPQGHAEHSGAPIHFRNFPKIPPFFICKASSITFMADLETDEVYSKISLVPLSGKELEFEDNRVGLINESELQDNPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTILAKDVHGKTWKFRHIYRGTPRRNLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCVGIRRAKRGLGIGDVHGESSSGWKPIGGFSPSLSNRLGSNGSGGGGPICTGKVRPESVIEAVTLAMNKEPFEVVYYPRASTSEFCVKASLVKAALQVPWGSGLRFKMPFETEDSSRISWFMGTISSVQVADPVFWPDSPWQLLQVTWDEPDLLQHVKRVNPWLVELVSNMPALDLSPFPPSRKKLRLPQYPELALNPTSYTNFLGDGGQFNCRPDNNTPSGMQGAKHGHYDLSLPDLSLGKFQLDPLLVSYSPPKLVPQNPLEHSKQDSKNPEDVREPRIILFGKLISTEQQISLSCSGGTGNSSSDGNVESEQQVSEETS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1202879 1204921 + Conep10aG0025500.1 Cone10ag0249 446047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0249 538 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 514 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone10ag0249 538 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
Cone10ag0249 538 MobiDBLite consensus disorder prediction 511 538 - -
Cone10ag0249 538 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
Cone10ag0249 538 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
Cone10ag0249 538 FunFam Auxin response factor 120 224 - -
Cone10ag0249 538 Gene3D - 317 389 - -
Cone10ag0249 538 MobiDBLite consensus disorder prediction 423 444 - -
Cone10ag0249 538 SUPERFAMILY DNA-binding pseudobarrel domain 116 225 IPR015300 -
Cone10ag0249 538 FunFam Auxin response factor 316 389 - -
Cone10ag0249 538 Gene3D - 120 224 IPR015300 -
Cone10ag0249 538 MobiDBLite consensus disorder prediction 472 493 - -
Cone10ag0249 538 Pfam Auxin response factor 278 361 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone10ag0249 538 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
Cone10ag0249 538 MobiDBLite consensus disorder prediction 423 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0249 Cone-Chr10:1202879 Cone5ag1237 Cone-Chr5:5735524 9.56E-183 dispersed
Cone1ag0715 Cone-Chr1:6611878 Cone10ag0249 Cone-Chr10:1202879 2.33E-69 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone11ag1059 Cone-Chr11:8336690 1.04E-167 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone13ag1264 Cone-Chr13:9569338 1.53E-229 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone18ag0519 Cone-Chr18:2547457 1.45E-170 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone19ag1251 Cone-Chr19:8592477 1.14E-233 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone3ag0278 Cone-Chr3:1451499 0 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone5ag1219 Cone-Chr5:5588367 2.16E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44164 PF02133 Transp_cyt_pur 3.80E-102 CL0062 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0249 K14486 - mdm:103419284 683.715