Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0252 ATGGCTAAAGACATAGAAGGCGGAGATCAAGGCAGCTTCTCGGCGCGCGACTACCACGACCCGCCACCAGCCCCAATAATCGACACGGACGAGCTAACCAAATGGTCCTTCTACCGAGCTATAATCGCCGAGTTCATCGCCACTCTTCTCTTCCTCTACATCACCGTCCTCACCGTCATTGGCTATAAATCCCAGACCGATGCAAATCATGGAGGTGAACCTTGCGGCGGTGTTGGAATCCTCGGGATCGCTTGGGCTTTCGGCGGTATGATCTTCGTCCTTGTTTACTGCACCGCGGGAATTTCTGGCGGGCACATTAACCCAGCAGTGACGTTTGGGCTTTTCTTGGCCCGTAAGGTTTCGTTGGTTCGGGCCGTTTTGTACATGGTAGCCCAGTGTCTAGGGGCCATTTGTGGGTGTGGGCTTGTGAAAGCATTTCAGAAAAGTTATTATAATGGATACGGAGGTGGGGCCAATGAGCTTGCTGATGGGTACAATAAAGGGACTGGATTAGGGGCTGAGATTATCGGAACTTTTGTCCTTGTGTACACTGTTTTCTCGGCCACTGATCCGAAAAGGAATGCTAGAGACTCCCATGTTCCCGTCTTGGCGCCACTGCCAATTGGGTTCGCCGTGTTCATAGTCCACTTGGCTACTATTCCGATCACCGGAACCGGAATCAACCCTGCCCGGAGTTTCGGAGCTGCGGTGATTTTTGGCAAGGAAAAGGCCTGGGATGACCAATGGATTTTCTGGGTCGGACCGTTCGTCGGAGCTGCAATTGCTGCGTTCTATCATCAGTACATACTAAGAGCAGGTGCTGTTAAGGCTTTAGGCTCGTTCAGAAGTTCTTCCAACATATAA 864 51.5 MAKDIEGGDQGSFSARDYHDPPPAPIIDTDELTKWSFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHGGEPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCGLVKAFQKSYYNGYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIFGKEKAWDDQWIFWVGPFVGAAIAAFYHQYILRAGAVKALGSFRSSSNI 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1213414 1214787 + Conep10aG0025800.1 Cone10ag0252 446050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0252 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cone10ag0252 287 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cone10ag0252 287 MobiDBLite consensus disorder prediction 1 25 - -
Cone10ag0252 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cone10ag0252 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0252 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Cone10ag0252 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0252 Cone-Chr10:1213414 Cone5ag1231 Cone-Chr5:5673499 6.01E-182 dispersed
Cone1ag1352 Cone-Chr1:56550924 Cone10ag0252 Cone-Chr10:1213414 2.71E-179 wgd
Cone10ag0252 Cone-Chr10:1213414 Cone18ag0517 Cone-Chr18:2534956 1.03E-180 wgd
Cone10ag0252 Cone-Chr10:1213414 Cone3ag0280 Cone-Chr3:1462429 2.24E-84 wgd
Cone10ag0252 Cone-Chr10:1213414 Cone5ag0337 Cone-Chr5:1440129 7.47E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0252 K09872 - cit:102608729 538.495