Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone10ag0253 | ATGGGAAACGTCGGAAGTAGAGGTGGAGCCAACGGTAGCCGGAGGAGCGACACCCGTCGGAATCATCCTCCGCCGCAGCCTGCGGCACAGTCTCAGCCTGAAATCATTGAGACCCGATATGTATACGCGGCCGCGAGACCGTACACAATTAATCAGCCGCAATACTACCAGCAACCAGGACTCCATGGGCCACGGGAACTACAAACTACCCCGCCGATCCCTTTACCGGATTCGTACGGTCACCACCAGCGTGGGCTTCCTCCGAATTGGGCCGCTGCTGGGTACTCTCCTATTGGGCCTGTTATACCCGCCCAAAATCAGATGCCTAGTGTTGAACTTGAACGTGAAAAGGCGGTTACTATTCGAAATGATGTCAACCTGAAGAAGGAGACCCTCAGGATTGAACCCGATGAGAATAATCCCGGAATGTTCCTTGTCGCGTTCACATTTGATGCCACCGTTGCTGGAAGCATCACCATTATTTTCTTTGCGAAAGAAGGGGAGGACTCAAACCTCATACCCAAAAAGGAAAACTTTCTCGAACCCGTAACGGTAAATTTCGAACGAGGTCTAGGGCAGAAATTCAGGCAACCTTCTGGGACTGGGATCGACTTGTCGGCCGAGAACGAGTCGGAGCTTCTACGAGCGAGCGATATTGACAGTGTGTACCCTTTAGCGGTGAAAGCAGAAGCAATGGGAGGAACAATGAACTCCCAGATAACCGGAGCCGTGTTTGAAAAGGGGAGAGGTGAATGTCACGTGAGAGTCGCGAAACAGATACTGTGGGTGAATGGGAAGAGGTATGAGCTGCAAGAGATTTACGGAATAGGGAATTCTCATGTTGATGGGGACGTAGATGGAAATGAGGCGGGAAAAGATTGTGTAATTTGCATGTCCGAACCTAGAGACACAACCGTGCTTCCTTGCCGCCATATGTGCATGTGTAGTGGCTGTGCGAATGTATGGAAGTCCCGAACGGATCGGTGTCCAATTTGCAGGCAACCGGTCGATAGGCTGTTAGAGATTAGGGTTAGCAATGGATCATCGGAGTGA | 1053 | 51.19 | MGNVGSRGGANGSRRSDTRRNHPPPQPAAQSQPEIIETRYVYAAARPYTINQPQYYQQPGLHGPRELQTTPPIPLPDSYGHHQRGLPPNWAAAGYSPIGPVIPAQNQMPSVELEREKAVTIRNDVNLKKETLRIEPDENNPGMFLVAFTFDATVAGSITIIFFAKEGEDSNLIPKKENFLEPVTVNFERGLGQKFRQPSGTGIDLSAENESELLRASDIDSVYPLAVKAEAMGGTMNSQITGAVFEKGRGECHVRVAKQILWVNGKRYELQEIYGIGNSHVDGDVDGNEAGKDCVICMSEPRDTTVLPCRHMCMCSGCANVWKSRTDRCPICRQPVDRLLEIRVSNGSSE | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1216381 | 1218002 | + | Conep10aG0026000.1 | Cone10ag0253 | 446051 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone10ag0253 | 350 | PANTHER | MAHOGUNIN | 1 | 346 | IPR045194 | GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER) | |
| Cone10ag0253 | 350 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 278 | 343 | - | - | |
| Cone10ag0253 | 350 | ProSiteProfiles | Zinc finger RING-type profile. | 294 | 333 | IPR001841 | - | |
| Cone10ag0253 | 350 | CDD | mRING-HC-C3HC5_MGRN1-like | 292 | 333 | IPR045195 | - | |
| Cone10ag0253 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 343 | IPR013083 | - | |
| Cone10ag0253 | 350 | SMART | ring_2 | 294 | 332 | IPR001841 | - | |
| Cone10ag0253 | 350 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cone10ag0253 | 350 | Pfam | Zinc finger, C3HC4 type (RING finger) | 292 | 338 | - | - | |
| Cone10ag0253 | 350 | SUPERFAMILY | RING/U-box | 293 | 339 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0253 | Cone-Chr10:1216381 | Cone4ag0207 | Cone-Chr4:952688 | 3.16E-77 | dispersed | |
| Cone10ag0253 | Cone-Chr10:1216381 | Cone13ag1269 | Cone-Chr13:9587451 | 4.68E-127 | wgd | |
| Cone10ag0253 | Cone-Chr10:1216381 | Cone19ag1257 | Cone-Chr19:8616095 | 3.36E-145 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone10ag0253 | K27504 | - | csv:101216150 | 429.483 |