Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0256 ATGCAGATGATGTCCGCTAGTAGTCATGCCTTTTCTCTACCTACTTCAATAGGAGGGTTCTCTCAAGAGAACAACACAAACACAAATCATAACCCGAATCCTAATCGGAATCCAAACCCCGTCATCAAGAAGAAGAGAAATCAACCAGGAAACCCAGATCCAGATGCTGAGGTTATAGCGTTATCTCCGAAAACGCTCATGGCGACGAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAGAATTTACAGCTTCATCGAAGAGGTCATAATCTTCCGTGGAAGCTCCGACAAAGAACCAACAAAGAGGTTGTGAGGAAGAAGGTCTATATTTGCCCTGAGAAAACTTGTGTCCATCATGACTCATCAAGAGCTCTTGGAGACCTCACTGGAATCAAAAAACATTTCAGCAGAAAACACGGGGAGAAGAAATGGAAATGTGAGAAATGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAAACCTGTGGAACTAGAGAGTACAAGTGTGATTGTGGAACCCTTTTCTCCAGGAAAGACAGTTTCATAACGCATAGAGCTTTCTGCGATGCCTTAGCTGAAGAGAGTGTAAGACTAACTTCAGTTCCAGCCTCGAGTTTGCATTTTGGAAACGATTCGATAAGTGAAGCCCTAATCGAACCTCATTCCACTGTGTCACACAGATTTCTCGGTCGAGGAGTTCAAGATGTTTCCGGAATTCCCAGCCACTTCGGCTCCGGAACATTTCTTCAAGAATTTAGCAATCATCTAAATATGAGCAACTCGCTCGGATCAGCTGACCACCAGCAAAAAGCCAGACTCTTATTCGGTTTAAGTGATGATCAAACAAATAACAACCACTCCCATCATCATGATCTGTTCAATTCCATGGATCAAAATCTAGTCGGTTTGCCCGACCACATGGACCGGAAAATGGCATCGGAAAATGTATTTGACTCTTCTCAAATGCCGAATTTCGGAATCGGAAATAACTATGGAATTTCAGGATTCAATAAAAGTGCTAGTACTACAAATAATGCAAGTCTCTCTCTTTCGCCAGGTCATCAATTAGGGCTAAAGAAAGAAGCTTCTTTATCATCACTATTTTACTCTGAAACCTGTAGTACTACCAAGAAGCCGATTAATTCACCAATGTCGGCTACTGCCCTTCTCCAAAAAGCAGCCCAAATGGGTTCAACCAGATCAAGTACTACTCATACTAACCCATCCTTACTCCATGGGAACACATTTGGAGTACTCATGAGCACATCATCTTCTTCAGCTAATAATTCGTCGAACCCTACAATCTTCAACTCCATAAATCAAACAAGATCGAGGGAATTACACCAAGCTTTCAATGTGGGTGGTAGTCATGATCATCATGGAGCAATGGTGAGTAGTAGTACGTCACCAAAGAGTACTACTAATTTTGATGAGCTCGTAAGGCAAAGTACTTGCGGGAAAATATCAACTCTTGATCAGCTACATTTAGTACCATTATCAAAGCTTAATCAGAGCTCTAACAGTTATAATTATAACGATGATGGAATAATGGGGAACAGTAGTTTGACCAGGGATTTTCTTGGCATGGGAGCTGGAGGAGTAGAAGATCTAGCTAAATTTGCTAATTACATGGCAGATAGCTTGAGCCAATTCACGAGCCACTATTGA 1695 41.47 MQMMSASSHAFSLPTSIGGFSQENNTNTNHNPNPNRNPNPVIKKKRNQPGNPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVVRKKVYICPEKTCVHHDSSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRLTSVPASSLHFGNDSISEALIEPHSTVSHRFLGRGVQDVSGIPSHFGSGTFLQEFSNHLNMSNSLGSADHQQKARLLFGLSDDQTNNNHSHHHDLFNSMDQNLVGLPDHMDRKMASENVFDSSQMPNFGIGNNYGISGFNKSASTTNNASLSLSPGHQLGLKKEASLSSLFYSETCSTTKKPINSPMSATALLQKAAQMGSTRSSTTHTNPSLLHGNTFGVLMSTSSSSANNSSNPTIFNSINQTRSRELHQAFNVGGSHDHHGAMVSSSTSPKSTTNFDELVRQSTCGKISTLDQLHLVPLSKLNQSSNSYNYNDDGIMGNSSLTRDFLGMGAGGVEDLAKFANYMADSLSQFTSHY 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1223433 1226181 - Conep10aG0026300.1 Cone10ag0256 446054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0256 564 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 175 213 - -
Cone10ag0256 564 SMART c2h2final6 149 169 IPR013087 -
Cone10ag0256 564 SMART c2h2final6 114 144 IPR013087 -
Cone10ag0256 564 SMART c2h2final6 72 94 IPR013087 -
Cone10ag0256 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Cone10ag0256 564 Gene3D Classic Zinc Finger 51 127 - -
Cone10ag0256 564 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 148 172 - -
Cone10ag0256 564 MobiDBLite consensus disorder prediction 1 44 - -
Cone10ag0256 564 Gene3D Classic Zinc Finger 128 205 - -
Cone10ag0256 564 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Cone10ag0256 564 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Cone10ag0256 564 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 110 144 - -
Cone10ag0256 564 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 542 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone10ag0256 564 FunFam protein indeterminate-domain 12-like 51 120 - -
Cone10ag0256 564 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Cone10ag0256 564 MobiDBLite consensus disorder prediction 1 55 - -
Cone10ag0256 564 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0256 Cone-Chr10:1223433 Cone17ag0574 Cone-Chr17:2964295 1.38E-103 dispersed
Cone10ag0256 Cone-Chr10:1223433 Cone11ag1288 Cone-Chr11:9550552 9.01E-91 wgd
Cone10ag0256 Cone-Chr10:1223433 Cone13ag1273 Cone-Chr13:9597910 4.16E-110 wgd
Cone10ag0256 Cone-Chr10:1223433 Cone18ag0291 Cone-Chr18:1420318 1.07E-102 wgd
Cone10ag0256 Cone-Chr10:1223433 Cone19ag1261 Cone-Chr19:8626165 7.39E-118 wgd
Cone10ag0256 Cone-Chr10:1223433 Cone3ag0282 Cone-Chr3:1468105 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44165 PF00201 UDPGT 9.70E-17 CL0113 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0256 K25870 - mdm:103450063 457.988