Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0264 ATGGCCGACGGTCCGGCGAGTCCCGGTGGAGGGAGCCACGAGAGTGGCGAGCATAGCCCTCGTTCCAATGTCCGAGAGCAGGATAGGTACCTTCCGATTGCGAATATCAGCCGGATTATGAAGAAAGCTCTCCCTGCCAACGGAAAGATCGCAAAGGATGCCAAGGAGACTGTGCAGGAATGTGTTTCTGAGTTCATTAGTTTCATCACCAGCGAGGCGAGTGATAAGTGCCAGAGAGAGAAGAGGAAGACGATTAACGGGGATGATCTGCTCTGGGCCATGGCTACTTTGGGGTTTGAGGATTATATTGATCCGCTTAAAGTATACCTGGCAAGATACAGAGAGATGGAGGGTGATACCAAGGGGTCAGCAAAGGGTGGGGAAGCGTCTGCTACTAGAGATGCTCAAGCTCAACTAGGCCCAAATGCTCAGATTGCTCATCAAGGCTCTTTTACCCAAGGAATTAATTATGCAAATTCTCAACAGGTGCAATATCTGGAAATTCCAATGCGGGCAATATGA 522 49.81 MADGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYREMEGDTKGSAKGGEASATRDAQAQLGPNAQIAHQGSFTQGINYANSQQVQYLEIPMRAI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1261543 1263392 - Conep10aG0027200.1 Cone10ag0264 446062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0264 173 SUPERFAMILY Histone-fold 27 135 IPR009072 GO:0046982(InterPro)
Cone10ag0264 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cone10ag0264 173 FunFam Nuclear transcription factor Y subunit B-3 19 144 - -
Cone10ag0264 173 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0264 173 Gene3D Histone, subunit A 16 153 IPR009072 GO:0046982(InterPro)
Cone10ag0264 173 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cone10ag0264 173 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cone10ag0264 173 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cone10ag0264 173 MobiDBLite consensus disorder prediction 1 28 - -
Cone10ag0264 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 159 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0264 Cone-Chr10:1261543 Cone12ag1312 Cone-Chr12:9924263 1.09E-58 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone10ag0264 Cone-Chr10:1261543 2.90E-68 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone13ag1293 Cone-Chr13:9673921 4.83E-80 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone19ag1279 Cone-Chr19:8705820 4.42E-99 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone3ag0290 Cone-Chr3:1505735 3.22E-112 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone5ag0323 Cone-Chr5:1363391 1.53E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44167 PF04003 Utp12 1.80E-18 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0264 K08065 - gmx:100820170 275.789