Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0265 ATGTGGGATCTCAATCTCGACGTCGTTTCCGACGATTCAGCTTCTGGCTCACCCGAGGTGGTTACAGAGAAGTTCGTTCAGCTTTTTAGTATTCAAATGGAGAACTCTGCCGGAAGCTTGAATTCATCCTCCGTTTTGAACACTGAGCCCTATTCTAACACTACCGGCGACGAGGACTCGACCTCGAACGCCGAAGATGCTGTTGCCATGCACTCTTTTGCCATTCTGAACAAAGACGACGTTGTCGGTGTCCGTACGATCCAGCTTTTCCCTGTTTCCGGCGAGTCTTCTTCCGCTCCATGTACGCAGGAGCAACAGTGGTTGGAACTCTCTGCGTTGGAGAAGACGAACTATAATGGGCCTGCGGGGCAGGGGATCATAGTGCAGCGTCAGCCATTGAAGAAGAGTCGACGTGGACCGAGGTCAAGAAGCTCGCAGTATCGTGGGGTTACGTTTTACAGAAGAACTGGAAGATGGGAATCACATATTTGGGATTGTGGAAAGCAAGTCTACTTGGGAGGTTTTGACACTGCCCATTCGGCAGCTAGGGCTTATGATAGAGCGGCGATCAAGTTCCGTGGGCTCGATGCTGACATAAACTGTGATATCAATGACTATGAAGAAGAAATTAAGCAGATGAGTAATTTCACCAAGGAGGAATTTGTGCACATTCTTCGCCGCCAGAGTTCCGGATTTTCAAGGGGGAGTTCGAAATACAGAGGAGTTACCCTCCACAAATGTGGCCGATGGGAAGCTCGTATGGGACAGTTTCTTGGCAAGAAGTACATATATCTTGGACTTTTTGATAGCGAGATAGACGCTGCAAGAGCTTATGACAAGGCTGCAATAAAATGCAACGGGCGGGAAGCAGTTACCAACTTTGAGCCGAGCTCGTATCATGGGGAGTTAGCTTCTGAAGTTGAGAATGGAGCAATCAACCAAAATCTTGACTTGAACTTGGGGATATCTCCTCCTTATCTCTTCGATGGCATGAAGGAAGAAATCGATGGCCGTAGTATTCTTCACGGCGGCTCTGATAACCCCCCTACTGATAGGAGAGCAAGGCTTGACAATCGAATGAGGGCTGCTCAGCCTTGTGTCCCTTCAGTAACATCGAAGCACCATTCTGTCTTTAATGGTGTTGATTCAAACTTCGTTCCCATCTATCGGGAAAGAGCAATGGAGAAGAGGATGGAGGTTGACTCATACACGGACTGGGCATACGGCGGAGCAATTCCATCGTCGATCTTCTCTGCTGCAGCATCATCAGGATTCCATTCAACTAGTGCTACTTTAAATTCAGCTTCTGCCAATAATAGTGTTGGTCAACTCCATTTCCCACACACAGCATTCTCCCACCATTTTCCTCCTCATCCCCCTCCGCCTCCTCCTCCCTTGACCAACAGCAACTTGGCCTACTTCTTCTGCAAGAGCTGA 1437 48.57 MWDLNLDVVSDDSASGSPEVVTEKFVQLFSIQMENSAGSLNSSSVLNTEPYSNTTGDEDSTSNAEDAVAMHSFAILNKDDVVGVRTIQLFPVSGESSSAPCTQEQQWLELSALEKTNYNGPAGQGIIVQRQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGLDADINCDINDYEEEIKQMSNFTKEEFVHILRRQSSGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIDAARAYDKAAIKCNGREAVTNFEPSSYHGELASEVENGAINQNLDLNLGISPPYLFDGMKEEIDGRSILHGGSDNPPTDRRARLDNRMRAAQPCVPSVTSKHHSVFNGVDSNFVPIYRERAMEKRMEVDSYTDWAYGGAIPSSIFSAAASSGFHSTSATLNSASANNSVGQLHFPHTAFSHHFPPHPPPPPPPLTNSNLAYFFCKS 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1265019 1268015 - Conep10aG0027300.1 Cone10ag0265 446063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0265 478 ProSiteProfiles AP2/ERF domain profile. 146 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 Pfam AP2 domain 146 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 Pfam AP2 domain 237 287 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 CDD AP2 237 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 ProSiteProfiles AP2/ERF domain profile. 238 295 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 SMART rav1_2 238 301 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 SMART rav1_2 146 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 MobiDBLite consensus disorder prediction 40 63 - -
Cone10ag0265 478 FunFam AP2-like ethylene-responsive transcription factor 145 204 - -
Cone10ag0265 478 SUPERFAMILY DNA-binding domain 145 201 IPR016177 GO:0003677(InterPro)
Cone10ag0265 478 FunFam AP2-like ethylene-responsive transcription factor 237 297 - -
Cone10ag0265 478 Gene3D AP2/ERF domain 237 296 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 Gene3D AP2/ERF domain 145 204 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 CDD AP2 146 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 332 - -
Cone10ag0265 478 MobiDBLite consensus disorder prediction 121 146 - -
Cone10ag0265 478 SUPERFAMILY DNA-binding domain 237 296 IPR016177 GO:0003677(InterPro)
Cone10ag0265 478 PRINTS Ethylene responsive element binding protein signature 239 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0265 478 PRINTS Ethylene responsive element binding protein signature 277 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0265 Cone-Chr10:1265019 Cone8ag0138 Cone-Chr8:727322 5.61E-108 dispersed
Cone1ag1335 Cone-Chr1:56459580 Cone10ag0265 Cone-Chr10:1265019 6.76E-59 wgd
Cone1ag0696 Cone-Chr1:6470469 Cone10ag0265 Cone-Chr10:1265019 8.70E-134 wgd
Cone10ag0265 Cone-Chr10:1265019 Cone3ag0291 Cone-Chr3:1509147 2.16E-284 wgd
Cone10ag0265 Cone-Chr10:1265019 Cone5ag0321 Cone-Chr5:1359024 2.86E-62 wgd
Cone10ag0265 Cone-Chr10:1265019 Cone5ag1204 Cone-Chr5:5461638 2.41E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44168 PF04003 Utp12 5.20E-20 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0265 K09284 - rcu:8283831 447.203