Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0269 ATGTTGCAAGAACTAAATCTCTGTTTGCAAAATGAGAAGAAAAGAAAGAAGGAAGTTTTATATAGGGAAGATGATGACTTGATTAGAAGTAGTAGAATAGCAAAAGATGTGATTAGTGATGGGGAAGGAGAGGGTGTGTGGGGCCAGAGTGTCGTACAAATCTCGAAAAAACAACAACAGCTGCTTCATCAACGGCCGATCATTTGTTGGGAGAGATTTCTACACCGCAGATCCCTCAAAGTGATGTTAGTTGAAAACGATGATTGTACTCGTCTAATTGTTACCGCCCTTCTTCGTAATTGCCATTATGAAGTTATCGAGGTTGCAAATGGATTACAAGCATGGAAGATTCTAGAAGATCTTACCAATCATATCGATCTTGTCTTAACGGAGGTGGTCATGCCCTGTGTATCTGGAATCGGTCTGTTATGCAAGATCATGAGCCATAAAACGCGCAAGACCGTTCCCGTCATTACGATGTCATCTCACGATTCAATGGGTTTAGTCTTCAAAAAATATTGTCAAGGGGTGCCGTTGACTGGAAGTGAAAGTGGTACAAATACCCAGAAGTCTGTAAAGTCGAAAGCGGATGGACAATCAGGCAACAACAGTGAAAGTGATGATGAAGAAGTGAATGAGAGCATTGGTTTGAACATTGGGTGTGAAAGTGACAGTGGGAGTGCCACTCAGAGCTCTTGGACAAAACAAGCAATTGAAGTTGAAGTTGAAATACCTCAACCTATCTCTCCTTGTCCTGGCAGTACTTGTGCTCAAGTTGTCCATTCAAAGGCCAAGACACTTTGTAACCACGTGGACCCCTCTCCTTCCCCGAACTGGTCTCGTGAACAAAAGCGACAAGAACAACTTGATAATATAGCAACGAGTAAAGAGTTAGACTTACAGCTTCGACTCTCAAATCCTGAACTTCTCATCACAAAACCAAAAACTGTGCAAAAATCTAGGAGTCTGCCTGGAAAGCTAAAATATGAATACAGTAATCTAAAAGGTCTTTCCACAAATACTATAGATTGTCAGATATACTGCACTGAGGTTGAGGCTCGAAACAAACATCTCGACATTACTGATTCTGAATTAGTACAGCCATCTCTTGAGCTCGGTTTGAAAAGGCTCGGAGGAGTTGAAGACGCCGGAAAATCGGTTTTAGATTATCATAATGTTCTAAGATGTTCCAAATCTGCTACTTTTGCAAGGTATAATGGAATAACAAGCTTTAATAAGAATGATATCACCTTAGAAGATTTAAACAAAGAATCGAATGATAATATTCTATCCCACTCCCTTGGAACTCCTCTGAATCAAGGGTCGAATGAAGGAAGCAATAATATCGACATGGGGTCCACGACTAACAATGCCTTCTTCACCAAGTCATTAGTACTCGACAAATTTCCCCACCCATCATCTCCTTTCCATTGTATAAAAACTGAAACTTCTCCTATTCATCCGCCTCAGCAAATCCCGATCATCCAATTAGAGTCGAATGGTGAGGGGTCAATGAATTTGTTAGGTGGTTGGGTTGAAGGTCAAGCTGCAAATTACAGTGTCAATGAAAGTGGGCCTGGGAGCAATGGTCAAAATGGCATCACTAGTGCAGTTAATGCAGGGGTCACGAACATGGAAAGCGGAACTGGCCAGAATAGTGTTGACCATAACAAGTCTTCTCAAAGAGAAGTGGGTCTGACCAAGTTTAGGCAAAAGAGAAAGGAGAGATGCTTTCAGAAAAAGGTTCGCTATCAAACCGGAAGAGACTAG 1770 41.53 MLQELNLCLQNEKKRKKEVLYREDDDLIRSSRIAKDVISDGEGEGVWGQSVVQISKKQQQLLHQRPIICWERFLHRRSLKVMLVENDDCTRLIVTALLRNCHYEVIEVANGLQAWKILEDLTNHIDLVLTEVVMPCVSGIGLLCKIMSHKTRKTVPVITMSSHDSMGLVFKKYCQGVPLTGSESGTNTQKSVKSKADGQSGNNSESDDEEVNESIGLNIGCESDSGSATQSSWTKQAIEVEVEIPQPISPCPGSTCAQVVHSKAKTLCNHVDPSPSPNWSREQKRQEQLDNIATSKELDLQLRLSNPELLITKPKTVQKSRSLPGKLKYEYSNLKGLSTNTIDCQIYCTEVEARNKHLDITDSELVQPSLELGLKRLGGVEDAGKSVLDYHNVLRCSKSATFARYNGITSFNKNDITLEDLNKESNDNILSHSLGTPLNQGSNEGSNNIDMGSTTNNAFFTKSLVLDKFPHPSSPFHCIKTETSPIHPPQQIPIIQLESNGEGSMNLLGGWVEGQAANYSVNESGPGSNGQNGITSAVNAGVTNMESGTGQNSVDHNKSSQREVGLTKFRQKRKERCFQKKVRYQTGRD 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1282359 1285091 + Conep10aG0027700.1 Cone10ag0269 446067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0269 589 ProSiteProfiles Response regulatory domain profile. 80 192 IPR001789 GO:0000160(InterPro)
Cone10ag0269 589 MobiDBLite consensus disorder prediction 543 560 - -
Cone10ag0269 589 SMART REC_2 79 192 IPR001789 GO:0000160(InterPro)
Cone10ag0269 589 MobiDBLite consensus disorder prediction 543 572 - -
Cone10ag0269 589 Pfam Response regulator receiver domain 81 169 IPR001789 GO:0000160(InterPro)
Cone10ag0269 589 Gene3D - 72 178 - -
Cone10ag0269 589 MobiDBLite consensus disorder prediction 181 201 - -
Cone10ag0269 589 MobiDBLite consensus disorder prediction 181 211 - -
Cone10ag0269 589 SUPERFAMILY CheY-like 78 173 IPR011006 -
Cone10ag0269 589 PANTHER TWO-COMPONENT RESPONSE REGULATOR 75 312 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0269 Cone-Chr10:1282359 Cone1ag1021 Cone-Chr1:55118294 1.25E-25 dispersed
Cone10ag0269 Cone-Chr10:1282359 Cone11ag1091 Cone-Chr11:8511929 1.51E-45 wgd
Cone10ag0269 Cone-Chr10:1282359 Cone11ag1274 Cone-Chr11:9470078 2.29E-83 wgd
Cone10ag0269 Cone-Chr10:1282359 Cone16ag0184 Cone-Chr16:1189286 3.59E-09 wgd
Cone10ag0269 Cone-Chr10:1282359 Cone18ag0310 Cone-Chr18:1521944 1.13E-60 wgd
Cone10ag0269 Cone-Chr10:1282359 Cone19ag1288 Cone-Chr19:8731478 6.88E-67 wgd
Cone10ag0269 Cone-Chr10:1282359 Cone3ag0296 Cone-Chr3:1530099 9.03E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44170 PF00544 Pectate_lyase_4 4.40E-22 CL0268 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0269 K12129 - csv:101210765 450.669