Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0270 ATGGATCCCAAAGAAGTAGAGAGAGTAGTGGTTTCAAAACCAGTTGCATCAAGACCCACTAGCTCTAATTTCAGGTCCTTCTCCGAGCTCCTTGCCGGCGCCATTAATTCCTCTCTCCCTAATTCTTCCTCGGAAATTACTGTCCCTACCATTCGACCGAAAACCATCCGGTTCAAGCCAACCTCTATTCATCATCCTCCCACAGGGCTCATTTCTTCTCAGGCTGGAATCTCAGAATCAGCAGATGCCAATAATACTAATTCGGAAAGCAATAAGTCGTCCGTTGTATTCAAACCACGAGCTAAACTCGTGTCGAGAAGAACCGTTTCTCTCTTGGCAAATATGGGAAACTTCAGTTCTAATAGTCATAGTAACAGTCAGCAAACTCCACACCATACAGTTCCACAAACAAGTAATGCATCCATTGAGCCATCAAAGATTGTGGGAGAGGATCCAAAATCAGTACAACATCCTATGGCTCATTGTGATAGACCGTCATATGACGGATATAACTGGAGGAAATACGGTCAAAAGCAAGTCAAAGGAAGTGAGTACCCGAGAAGTTACTATAAATGTACGCATCCAAATTGTCCGGTGAAAAAGAAGGTGGAGAGATCATTAGATGGGCAAATTGCGGAGATTGTTTACAAGGGGGAGCATAATCATTCCAAGCCCCTACCTCCTAAACGGAACTCATCGGTCCTGCAAGGGACAGTGTCGGGTCCAGACAGGGTCGGTGAAGAGACCAACAACAATCCGTTTTGGAGTAATTTTCCGAACAAGAAGAATGATGGGTCGGAAGGAAGAATAGAAAACCGGAATGAAGTAGGATCATCTATTCCCGAAAAAGCTACGTTGCCTTATGAATCCGTTCCGGATAATTCTTGTGGTGTTAGTGGCGAATGCGAGGAATCACAAGGCAAAGGGGTTGAGGTTGAGGAGGATGAGTCAAGGAGTAAGAGAAGGAAACGTGAGAATCAGAATCAATCCAGTGAAGCAGGGATATCGGGCGAAGGCGTGGAGCCTCGTATTGTTGTTCAGAATTCAAATGATTCTGAGATTCTAGGTGATGGATTCCGATGGAGGAAATATGGGCAGAAGGTTGTCAAAGGATATCCATATCCAAGAAGTTACTACAGATGTACGAGTCCTAAATGCAATGTACGGAAGCATGTGGAAAGAGCATCAGAAGATCCGAAAGCTTTCATAACCACTTACGAGGGAAAGCACAACCACGCCATGCCTACAACCAAAAACACACATCCGGCTGCGGCTGGCTCCGAAACAGATTCAAAGGCTCAATCGAGTAAACACAGACAATGA 1323 44.97 MDPKEVERVVVSKPVASRPTSSNFRSFSELLAGAINSSLPNSSSEITVPTIRPKTIRFKPTSIHHPPTGLISSQAGISESADANNTNSESNKSSVVFKPRAKLVSRRTVSLLANMGNFSSNSHSNSQQTPHHTVPQTSNASIEPSKIVGEDPKSVQHPMAHCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSLDGQIAEIVYKGEHNHSKPLPPKRNSSVLQGTVSGPDRVGEETNNNPFWSNFPNKKNDGSEGRIENRNEVGSSIPEKATLPYESVPDNSCGVSGECEESQGKGVEVEEDESRSKRRKRENQNQSSEAGISGEGVEPRIVVQNSNDSEILGDGFRWRKYGQKVVKGYPYPRSYYRCTSPKCNVRKHVERASEDPKAFITTYEGKHNHAMPTTKNTHPAAAGSETDSKAQSSKHRQ 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1287334 1290106 + Conep10aG0027800.1 Cone10ag0270 446068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0270 440 FunFam WRKY transcription factor 154 226 - -
Cone10ag0270 440 MobiDBLite consensus disorder prediction 409 440 - -
Cone10ag0270 440 MobiDBLite consensus disorder prediction 116 159 - -
Cone10ag0270 440 FunFam WRKY transcription factor 57 341 415 - -
Cone10ag0270 440 MobiDBLite consensus disorder prediction 116 144 - -
Cone10ag0270 440 ProSiteProfiles WRKY domain profile. 168 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 SMART WRKY_cls 166 224 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 SMART WRKY_cls 355 414 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 MobiDBLite consensus disorder prediction 218 345 - -
Cone10ag0270 440 MobiDBLite consensus disorder prediction 1 22 - -
Cone10ag0270 440 SUPERFAMILY WRKY DNA-binding domain 165 225 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 Pfam WRKY DNA -binding domain 168 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 Pfam WRKY DNA -binding domain 357 412 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 SUPERFAMILY WRKY DNA-binding domain 350 415 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 MobiDBLite consensus disorder prediction 410 431 - -
Cone10ag0270 440 MobiDBLite consensus disorder prediction 311 328 - -
Cone10ag0270 440 ProSiteProfiles WRKY domain profile. 350 415 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 Gene3D WRKY domain 340 416 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 Gene3D WRKY domain 153 226 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0270 440 MobiDBLite consensus disorder prediction 227 263 - -
Cone10ag0270 440 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 88 423 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0270 Cone-Chr10:1287334 Cone2ag0536 Cone-Chr2:2960579 5.54E-70 dispersed
Cone10ag0270 Cone-Chr10:1287334 Cone13ag1300 Cone-Chr13:9709099 2.24E-128 wgd
Cone10ag0270 Cone-Chr10:1287334 Cone19ag1289 Cone-Chr19:8736402 2.44E-119 wgd
Cone10ag0270 Cone-Chr10:1287334 Cone3ag0297 Cone-Chr3:1535791 2.89E-267 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44171 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0270 - - - 0.0