Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0271 ATGGGATGGATTCCTTGTTCCGGAAATTCGACCAGTAAATCCAAGTCCAAAAAGACTAAGAACATAGAGGTTATCAACAAGAACCCAGCTGATCGGATCAAACCCACTTCAGATAATAAGTTAAAGAGAAGCTCTTCATTGAGTTCTAAGGAAGGTTCTAAAAACGGAGGGTCCGATCACATTGCAGCTAAGACTTTCACCTTCCGTGAGCTGGCCTCTGCCACCAGAAACTTCCGGGAAGAATGTCTTTTGGGTGAGGGTGGTTTTGGTAGAGTCTATAAAGGTCATTTGGAATGTATCAACCAGGTTGTAGCTATCAAGCAACTGGATCGTAATGGGCTACAAGGAAACAGAGAATTCCTCGTGGAAGTGTTGATGTTAAGTCTATTACATCACCCTAACCTTGTCAATCTCATTGGATATTGTGCTGATGGAGATCAACGCCTTCTTGTGTATGAATACATGTCTCTAGGATCTCTAGAAGACCATTTACACGAAATTTCGCCTGGTACAAAACATCTAGATTGGAATACGAGAATGAAAGTAGCAGCAGGAGCAGCCAAGGGATTGGAGTATCTGCATGACAAAGCTAACCCTCCTGTTATCTATCGGGATTTGAAATGTTCCAACATTTTGCTTGATGAAGGTTTTCATCCGAAATTATCTGATTTTGGGCTAGCAAAGCTGGGGCCAGTTGGGGACAATACCCATGTATCGACTAGAGTTATGGGCACTTATGGATATTGTGCTCCTGAGTATGCTATGACCGGTCAATTGACTTTGAAATCAGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATCATTACAGGTAGAAAAGCGATCGATAATTCGAAAGTTGCTGGAGAGCAAAATCTAGTTGCTTGGGCGAAGCCATTGTTCAAAGACAGGAGGAAATTTTCACAAATGGCGGATCCGATGCTGAAACGGCAATTTCCTCCAAGAGGGTTATACCAAGCTCTTGCTATAGCAGCAATGTGTGTTCAAGAGCAACCCAATATGCGGCCCGTCATAGCTGATGTTGTCACAGCCCTGTCTTATCTTGCAGCCCAAAGATACGATCCATCTACCGAACTGGCCCAAAGTTCCCTCCTTTCACCCGGTACTCCACCTAGAGGTCAACGGAATAGAGCCAGAAAGCTAAGTGTTGGAAGCTCAAATGGAAGGTCTCAAACAAAAAGATGGAGTTGA 1212 43.4 MGWIPCSGNSTSKSKSKKTKNIEVINKNPADRIKPTSDNKLKRSSSLSSKEGSKNGGSDHIAAKTFTFRELASATRNFREECLLGEGGFGRVYKGHLECINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLHEISPGTKHLDWNTRMKVAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGFHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKVAGEQNLVAWAKPLFKDRRKFSQMADPMLKRQFPPRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLAAQRYDPSTELAQSSLLSPGTPPRGQRNRARKLSVGSSNGRSQTKRWS 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1290438 1292891 + Conep10aG0027900.1 Cone10ag0271 446069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0271 403 Pfam Protein tyrosine and serine/threonine kinase 83 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0271 403 SUPERFAMILY Protein kinase-like (PK-like) 61 352 IPR011009 -
Cone10ag0271 403 MobiDBLite consensus disorder prediction 16 47 - -
Cone10ag0271 403 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Cone10ag0271 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0271 403 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0271 403 Gene3D Transferase(Phosphotransferase) domain 1 155 370 - -
Cone10ag0271 403 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Cone10ag0271 403 SMART serkin_6 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0271 403 MobiDBLite consensus disorder prediction 1 58 - -
Cone10ag0271 403 MobiDBLite consensus disorder prediction 1 15 - -
Cone10ag0271 403 CDD STKc_IRAK 84 352 - -
Cone10ag0271 403 MobiDBLite consensus disorder prediction 365 403 - -
Cone10ag0271 403 PANTHER OS07G0668900 PROTEIN 21 368 - -
Cone10ag0271 403 FunFam Serine/threonine-protein kinase PBS1 50 154 - -
Cone10ag0271 403 MobiDBLite consensus disorder prediction 386 403 - -
Cone10ag0271 403 Gene3D Phosphorylase Kinase; domain 1 49 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0271 Cone-Chr10:1290438 Cone14ag0778 Cone-Chr14:4523716 5.49E-192 dispersed
Cone1ag1332 Cone-Chr1:56450553 Cone10ag0271 Cone-Chr10:1290438 2.55E-205 wgd
Cone1ag0688 Cone-Chr1:6432681 Cone10ag0271 Cone-Chr10:1290438 1.09E-34 wgd
Cone10ag0271 Cone-Chr10:1290438 Cone11ag1273 Cone-Chr11:9465606 3.53E-177 wgd
Cone10ag0271 Cone-Chr10:1290438 Cone18ag0311 Cone-Chr18:1529245 7.98E-181 wgd
Cone10ag0271 Cone-Chr10:1290438 Cone3ag0298 Cone-Chr3:1540435 8.99E-273 wgd
Cone10ag0271 Cone-Chr10:1290438 Cone5ag0318 Cone-Chr5:1348653 7.14E-196 wgd
Cone10ag0271 Cone-Chr10:1290438 Cone5ag1197 Cone-Chr5:5414199 1.19E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81801 PF01603 B56 1.10E-186 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0271 - - - 0.0