Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag0305 | ATGAATTTTTCATCCATACCAGCTTATCTTGATCCAGCCAACTGGCAACAGCAACCAAACCATCGAAATGGAAGTAGTAGTAGCTCTAGTACCGGACCGGCCGGTAATATTTCTCAGCTAACTTCTGCTCCACCGTTACCTACCCCACCACTACCTCCACCACTACCTCCACTGCAGCCACATGGTAGTACTATCACAGGATCGATCCGCCCCGGCTCGATGGCTGATCGGGCCCGAATGGCTAACATACCGATGCCAGAAGCCGCACTACAATGTCCAAGATGTGAATCCACAAACACCAAGTTCTGCTACTACAATAACTACAACCTTTCTCAACCAAGGCACTTTTGCAAGGCTTGTAGAAGGTATTGGACAAGAGGAGGTGCCCTTAGGAGTGTTCCGGTTGGTGGTGGTTGTCGGAGAAATAAACGGAGCAAAAGTACCTCGAAATCACCTGCCGGGTCCGATAACCGTAGTCAAGCTAGTACAAGTACCGGTCCAGGTTCTTCAAATATCGGTATCAATTCTAATAGTACTACTGGAAATATTTTAAGTACTCATGATCATGTTATAGGGGTTTCGCATCAAGTCCCCTCTTTAAGGTTCATGACTCCTAATTTACATCAACTTACTGATCATTTCGGATGTGGTGATAGTCATATTAGCTTAAATTATGGCTTGAATTATGGAGGCACGGTGATTTCCGCTCCAATGGGTGGTAGTCATGGAGATTTAAATTTTCACCTTGGAAGTGTTAGTTTAGGTGATGGAAATGAAGGGAGCAGTACAATGAATACTATCGGTGGTCCCGGTGGTGGTCTTGGAGGGAGTTTCTTAGGGTTGGATCAATGGCGGCCCCCGCAATTTTCGTTTATGGGTTCGGGGTTAGACACTTCAATGGGGTTGTTTGAAAGCGGCCGTGGAAGCGGAGGTTCGAGTTATGGTGGTGGGGATCAAGTGGGGGAGCTCAAGGTGAGTAACAGAAGCACTAAGGAGAGTAGTGATGATCAGATAGCTGGTTCAATGAAAATGGAAGAAGCTCAAGGGCTAAACTTAGGGAGGCAGTATTTCGGAAGTCAAGGTAATGATCATGGTCAACATTATAACTGGGGTGGTCTCAATTCCAGTTTTACTTCTTCTTCCAATCCCAGAAACTAG | 1158 | 46.03 | MNFSSIPAYLDPANWQQQPNHRNGSSSSSSTGPAGNISQLTSAPPLPTPPLPPPLPPLQPHGSTITGSIRPGSMADRARMANIPMPEAALQCPRCESTNTKFCYYNNYNLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSKSTSKSPAGSDNRSQASTSTGPGSSNIGINSNSTTGNILSTHDHVIGVSHQVPSLRFMTPNLHQLTDHFGCGDSHISLNYGLNYGGTVISAPMGGSHGDLNFHLGSVSLGDGNEGSSTMNTIGGPGGGLGGSFLGLDQWRPPQFSFMGSGLDTSMGLFESGRGSGGSSYGGGDQVGELKVSNRSTKESSDDQIAGSMKMEEAQGLNLGRQYFGSQGNDHGQHYNWGGLNSSFTSSSNPRN | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1446767 | 1448200 | + | Conep10aG0031300.1 | Cone10ag0305 | 446103 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag0305 | 385 | MobiDBLite | consensus disorder prediction | 323 | 337 | - | - | |
Cone10ag0305 | 385 | ProSiteProfiles | Zinc finger Dof-type profile. | 90 | 144 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cone10ag0305 | 385 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 77 | 176 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone10ag0305 | 385 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cone10ag0305 | 385 | ProSitePatterns | Zinc finger Dof-type signature. | 92 | 128 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cone10ag0305 | 385 | MobiDBLite | consensus disorder prediction | 148 | 179 | - | - | |
Cone10ag0305 | 385 | MobiDBLite | consensus disorder prediction | 307 | 339 | - | - | |
Cone10ag0305 | 385 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
Cone10ag0305 | 385 | Pfam | Dof domain, zinc finger | 89 | 144 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cone10ag0305 | 385 | MobiDBLite | consensus disorder prediction | 354 | 385 | - | - | |
Cone10ag0305 | 385 | MobiDBLite | consensus disorder prediction | 43 | 60 | - | - | |
Cone10ag0305 | 385 | MobiDBLite | consensus disorder prediction | 134 | 179 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0305 | Cone-Chr10:1446767 | Cone1ag0700 | Cone-Chr1:6521195 | 1.43E-30 | dispersed | |
Cone20ag0393 | Cone-Chr20:1902356 | Cone10ag0305 | Cone-Chr10:1446767 | 3.35E-30 | transposed | |
Cone1ag1284 | Cone-Chr1:56242528 | Cone10ag0305 | Cone-Chr10:1446767 | 5.14E-47 | wgd | |
Cone1ag0649 | Cone-Chr1:6195157 | Cone10ag0305 | Cone-Chr10:1446767 | 4.44E-49 | wgd | |
Cone10ag0305 | Cone-Chr10:1446767 | Cone13ag1337 | Cone-Chr13:9841457 | 6.74E-80 | wgd | |
Cone10ag0305 | Cone-Chr10:1446767 | Cone19ag1320 | Cone-Chr19:8863235 | 8.47E-83 | wgd | |
Cone10ag0305 | Cone-Chr10:1446767 | Cone3ag0333 | Cone-Chr3:1692917 | 2.93E-208 | wgd | |
Cone10ag0305 | Cone-Chr10:1446767 | Cone5ag0270 | Cone-Chr5:1144528 | 3.66E-48 | wgd | |
Cone10ag0305 | Cone-Chr10:1446767 | Cone5ag1158 | Cone-Chr5:5209015 | 2.09E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44173 | PF02519 | Auxin_inducible | 4.90E-24 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag0305 | - | - | - | 0.0 |