Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0305 ATGAATTTTTCATCCATACCAGCTTATCTTGATCCAGCCAACTGGCAACAGCAACCAAACCATCGAAATGGAAGTAGTAGTAGCTCTAGTACCGGACCGGCCGGTAATATTTCTCAGCTAACTTCTGCTCCACCGTTACCTACCCCACCACTACCTCCACCACTACCTCCACTGCAGCCACATGGTAGTACTATCACAGGATCGATCCGCCCCGGCTCGATGGCTGATCGGGCCCGAATGGCTAACATACCGATGCCAGAAGCCGCACTACAATGTCCAAGATGTGAATCCACAAACACCAAGTTCTGCTACTACAATAACTACAACCTTTCTCAACCAAGGCACTTTTGCAAGGCTTGTAGAAGGTATTGGACAAGAGGAGGTGCCCTTAGGAGTGTTCCGGTTGGTGGTGGTTGTCGGAGAAATAAACGGAGCAAAAGTACCTCGAAATCACCTGCCGGGTCCGATAACCGTAGTCAAGCTAGTACAAGTACCGGTCCAGGTTCTTCAAATATCGGTATCAATTCTAATAGTACTACTGGAAATATTTTAAGTACTCATGATCATGTTATAGGGGTTTCGCATCAAGTCCCCTCTTTAAGGTTCATGACTCCTAATTTACATCAACTTACTGATCATTTCGGATGTGGTGATAGTCATATTAGCTTAAATTATGGCTTGAATTATGGAGGCACGGTGATTTCCGCTCCAATGGGTGGTAGTCATGGAGATTTAAATTTTCACCTTGGAAGTGTTAGTTTAGGTGATGGAAATGAAGGGAGCAGTACAATGAATACTATCGGTGGTCCCGGTGGTGGTCTTGGAGGGAGTTTCTTAGGGTTGGATCAATGGCGGCCCCCGCAATTTTCGTTTATGGGTTCGGGGTTAGACACTTCAATGGGGTTGTTTGAAAGCGGCCGTGGAAGCGGAGGTTCGAGTTATGGTGGTGGGGATCAAGTGGGGGAGCTCAAGGTGAGTAACAGAAGCACTAAGGAGAGTAGTGATGATCAGATAGCTGGTTCAATGAAAATGGAAGAAGCTCAAGGGCTAAACTTAGGGAGGCAGTATTTCGGAAGTCAAGGTAATGATCATGGTCAACATTATAACTGGGGTGGTCTCAATTCCAGTTTTACTTCTTCTTCCAATCCCAGAAACTAG 1158 46.03 MNFSSIPAYLDPANWQQQPNHRNGSSSSSSTGPAGNISQLTSAPPLPTPPLPPPLPPLQPHGSTITGSIRPGSMADRARMANIPMPEAALQCPRCESTNTKFCYYNNYNLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSKSTSKSPAGSDNRSQASTSTGPGSSNIGINSNSTTGNILSTHDHVIGVSHQVPSLRFMTPNLHQLTDHFGCGDSHISLNYGLNYGGTVISAPMGGSHGDLNFHLGSVSLGDGNEGSSTMNTIGGPGGGLGGSFLGLDQWRPPQFSFMGSGLDTSMGLFESGRGSGGSSYGGGDQVGELKVSNRSTKESSDDQIAGSMKMEEAQGLNLGRQYFGSQGNDHGQHYNWGGLNSSFTSSSNPRN 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1446767 1448200 + Conep10aG0031300.1 Cone10ag0305 446103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0305 385 MobiDBLite consensus disorder prediction 323 337 - -
Cone10ag0305 385 ProSiteProfiles Zinc finger Dof-type profile. 90 144 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone10ag0305 385 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 77 176 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0305 385 MobiDBLite consensus disorder prediction 1 42 - -
Cone10ag0305 385 ProSitePatterns Zinc finger Dof-type signature. 92 128 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone10ag0305 385 MobiDBLite consensus disorder prediction 148 179 - -
Cone10ag0305 385 MobiDBLite consensus disorder prediction 307 339 - -
Cone10ag0305 385 MobiDBLite consensus disorder prediction 1 71 - -
Cone10ag0305 385 Pfam Dof domain, zinc finger 89 144 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone10ag0305 385 MobiDBLite consensus disorder prediction 354 385 - -
Cone10ag0305 385 MobiDBLite consensus disorder prediction 43 60 - -
Cone10ag0305 385 MobiDBLite consensus disorder prediction 134 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0305 Cone-Chr10:1446767 Cone1ag0700 Cone-Chr1:6521195 1.43E-30 dispersed
Cone20ag0393 Cone-Chr20:1902356 Cone10ag0305 Cone-Chr10:1446767 3.35E-30 transposed
Cone1ag1284 Cone-Chr1:56242528 Cone10ag0305 Cone-Chr10:1446767 5.14E-47 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone10ag0305 Cone-Chr10:1446767 4.44E-49 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone13ag1337 Cone-Chr13:9841457 6.74E-80 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone19ag1320 Cone-Chr19:8863235 8.47E-83 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone3ag0333 Cone-Chr3:1692917 2.93E-208 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone5ag0270 Cone-Chr5:1144528 3.66E-48 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone5ag1158 Cone-Chr5:5209015 2.09E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44173 PF02519 Auxin_inducible 4.90E-24 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0305 - - - 0.0