Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0315 ATGGATCCGCATCTTATTAGGGGATTCACTGGTTCAACAAATGGAATCCAATTAAGAAACCAGTATTTATCTGTTGGTTTGAATCAAAACCTTGAACCTGAACCTAGATATGGAAACAGAGAATTTCATCAGATTCGACCCGGTCTGTGTCTGAGTAACATAGCTTCGTCTTCAAGCAACATGCCCTCGAGCTCAAGTGTGAGCCACGAGGAAGATTCTCAGGAAGATTGTGACTTTTCCAATATAGTTTTGAGATACATAAGCCAGATGCTCATGGAAGAAGAAATGGATGACAAGACTTGTATGCTTCAAGATTCTTTGGATCTTCAGGCTGCTGAGAAATCATTTTATGAGGTCCTTGGTCAGAAATACCCCCCTTCCTCGGAAGAAAACCCATACATCAGTCAATACAGCGAAGTCCCAGATGATAATTTCTCAGGAAATTGTATTAGTTGCCTCACTACTAGTCACAGCGATGATAACCGAATTGAAATCCCGGGTGAAGGTATCTTTCAAATAACGAGTCCTCCAGTCTGTAGAAGTTCTTCTCTGTCATCTTATAACTCCTCAAATGGTATAGTCTGTCATCCAGATGGGCTGGTGGAATCTCTTAAGGATGGGAATCTTTGGGTACCTAGATTGGATAATGGAAATCAAACTGTTTGGCAGGTGAGAAAGGGAGTTGAGGAACCTTGCAAGTTTCTCTCAAGTGGGAATGGGTTATTCCATCCTTGGGAGGTTAATGGGTTATCAACTGAAAATCCTAGGGCAGAAAAGCTTGAGTTGGAGGAGGAGTCGTCGTCTTGTGGTTCGAGGGCAAGGAAGAATCTGGACAGAGAAGATGATGATCCGGAAGAAGAAAGAAGCAACAAGCAAGCTGCAGTTTTTGCTGAACCCACTTTGCGATCAGAGATGTTTGATATCATACTGCTTTGGAGCACTGGAAAAGGGCTGGAGCGACTGACAAAGACTAGTTCAGAGTTGAAGAGTGCAAAAAACAAAAAACCCATTTTGGAGAGCGGCAATCAACCACAAGGATCCAATGGAAGAAAGAATCGCGGGAAGAAACGAAACGTTAAAAAGGAAGTTGTGGATCTGAGAACTCTCTTGATTACTTGTGCACAAGCTGTTGCAGCTGATGATCGCAAGAATGCAAATGAACTTCTAAGGCAAATCAGGCAGCACTCTTCTCCCTTTGGAGATGGAAATCAGAGATTGGCGCATTCCTTTGCTAATGGCCTTGAGGCCCGTTTGGCTGGTAGTAGTAATGATACCCAGATTTACAAAGGCCTTATTAGCATAAGACCATCTGCAGCCGATCTCTTGAAAGCTTACCATTTATACATTGCAGCTTGCCCGTTTCGGAGAATCTCCCACTTTACCTCAAACAAGACCATAATGAATATAGCAGCAAACTCAACCAGACTCCATGTCATAGATTTCGGAATCCTTTACGGATTCCAATGGCCTACCCTTATACAACGAATCTCATGGAGATCAGGCGGACCTCCAAGGCTGAAGATCACTGGGATAGAGTTTCCCCAACCAGGTTTCCGGCCTGCAGAAAGAGTTGAGGAAACAGGGCGGCGCTTAACAACCTATGCCGAGACTTTCAAAGTACCTTTCGAGTACCATGCTGTTGCTAAAAATTGGGAAACCATTCAGCTTGAGGATCTTAAGATAGACAAGGATGAAGTTTTAGTTGTTAACTGTCTTTATCGAGGTAAGAATTTGCTTGATGAGAGTGTGGCTGTGGACAGTCCGAGAAAGATGTTTCTTGATTTGGTACGGAAAATTAATCCGGATCTCTTCATTCATGGGATAACTAATGGGGCCTATAATGCCCCATTTTTTGTGACCCGATTCAGAGAGGCACTGTTTCACTTCTCTGCCATGTTTGATATGCTTGAGACAGTAGTGCCTCGTGAGGATCAGGAGAGAATGCTGATTGAGAAAGAAATATTAGGTAGGGAGGCACTGAATGTTATAGCATGTGAAGGGTGGGAAAGAGTGGAAAGACCAGAGACGTACAAGCACTGGCAAGTCCGTATAATGAGGGCTGGGTTTGTGCAGATACCTTTCGACAGGGATATTGTTAAGACTGGAAGGGAGAAAGTGAGGATGGGTTACCATAAGGACTTTGTTATCGATGAAGATAGCCGTTGGGTTTTGCAGGGATGGAAGGGAAGAACCATCTATGCCCTTTCTGCTTGGAAACCTGCTAATTAG 2229 43.65 MDPHLIRGFTGSTNGIQLRNQYLSVGLNQNLEPEPRYGNREFHQIRPGLCLSNIASSSSNMPSSSSVSHEEDSQEDCDFSNIVLRYISQMLMEEEMDDKTCMLQDSLDLQAAEKSFYEVLGQKYPPSSEENPYISQYSEVPDDNFSGNCISCLTTSHSDDNRIEIPGEGIFQITSPPVCRSSSLSSYNSSNGIVCHPDGLVESLKDGNLWVPRLDNGNQTVWQVRKGVEEPCKFLSSGNGLFHPWEVNGLSTENPRAEKLELEEESSSCGSRARKNLDREDDDPEEERSNKQAAVFAEPTLRSEMFDIILLWSTGKGLERLTKTSSELKSAKNKKPILESGNQPQGSNGRKNRGKKRNVKKEVVDLRTLLITCAQAVAADDRKNANELLRQIRQHSSPFGDGNQRLAHSFANGLEARLAGSSNDTQIYKGLISIRPSAADLLKAYHLYIAACPFRRISHFTSNKTIMNIAANSTRLHVIDFGILYGFQWPTLIQRISWRSGGPPRLKITGIEFPQPGFRPAERVEETGRRLTTYAETFKVPFEYHAVAKNWETIQLEDLKIDKDEVLVVNCLYRGKNLLDESVAVDSPRKMFLDLVRKINPDLFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETVVPREDQERMLIEKEILGREALNVIACEGWERVERPETYKHWQVRIMRAGFVQIPFDRDIVKTGREKVRMGYHKDFVIDEDSRWVLQGWKGRTIYALSAWKPAN 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1500281 1503500 + Conep10aG0032300.1 Cone10ag0315 446113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0315 742 MobiDBLite consensus disorder prediction 257 296 - -
Cone10ag0315 742 ProSiteProfiles GRAS family profile. 357 739 IPR005202 -
Cone10ag0315 742 MobiDBLite consensus disorder prediction 325 358 - -
Cone10ag0315 742 Pfam GRAS domain family 366 739 IPR005202 -
Cone10ag0315 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 339 738 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone10ag0315 742 MobiDBLite consensus disorder prediction 257 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0315 Cone-Chr10:1500281 Cone1ag0630 Cone-Chr1:6099453 1.49E-197 dispersed
Cone20ag1330 Cone-Chr20:8597688 Cone10ag0315 Cone-Chr10:1500281 5.54E-22 transposed
Cone1ag1271 Cone-Chr1:56198858 Cone10ag0315 Cone-Chr10:1500281 1.57E-214 wgd
Cone1ag0629 Cone-Chr1:6095291 Cone10ag0315 Cone-Chr10:1500281 1.77E-155 wgd
Cone10ag0315 Cone-Chr10:1500281 Cone13ag1347 Cone-Chr13:9890450 4.06E-38 wgd
Cone10ag0315 Cone-Chr10:1500281 Cone19ag1332 Cone-Chr19:8911519 0 wgd
Cone10ag0315 Cone-Chr10:1500281 Cone3ag0346 Cone-Chr3:1764971 1.09E-111 wgd
Cone10ag0315 Cone-Chr10:1500281 Cone5ag0258 Cone-Chr5:1097559 5.82E-217 wgd
Cone10ag0315 Cone-Chr10:1500281 Cone5ag1134 Cone-Chr5:5088153 2.39E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44176 PF03641 Lysine_decarbox 7.80E-45 CL0349 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0315 K27753 - cit:102622070 861.677