Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0342 ATGGCGGAGGGTTATGATCAGCAGGCCTATGATCATGTCCCACAAAGAAGTAGAAGAGATAAGCTCAGAGTTCTGTCCTCCCTGCAGGTGGAAGAACCAGCTGCCGTACCTAATTATAATTTTCATAACACGAGTTCATCAGGTTCGTTTCCTTTGTTTGATCCCTCTCTTATCCCATCAGCAGCTGGAAACAATTGTGTTATCAAAGAAGAAAGATCAGCAATAAATCATTTCATGGGTTTTCCTGGAAACTGCATTATGGTGGACCATGATGATCATCACCAATCGCCTACCAACTTACCTATTAACAGTAACCCATTCGTTAATTATCCTCCAGAAAACGGTTTTCAGTCTCTTAGAGATTTAAACGACATGATGGTGTTTAATAAGCTGCCGGAACCGTTGTCACTGTCACTTTCATCTCGGCCATTAGAGGAGATCAACCTTCAAAGATATGGGCCGGCTGCAGCTTCTAATTATAATGCTGAGTCCTGCAGGCCGGCCGGCTCATCAGTTCCTCTAGGGCCTTTTACAGGTTACGCTTCAATCTTGAAAGCTTCGAGGTTTTTAAAGCCTGTCCAGCAGCTCTTGGAGGAATTCTGTGAAGTTGAGGGTCAGGGATCAATTCATGTCAACGAGAAAATAGTGGCCGATCCGGGTTTAACGGAATACTCTTCGTCTTTTGATTATCACTGTGGAGATGGAGGTGATGATCAAGGTGAAGGTGGGAGAAAGAAGTCTAGGCTAATCTCCATGCTCGATGAGGTTTGCAGACGATACAAGCAGTATTTTCAACAAATGCAGGCAGTGGTAGCTTCATTTGAATGCGTTCCTGGACTAGGGAATGCGACTCCATATGTTACCTTAGCTATGAAATCCATGTCAAAGCACTTTAAGTACTTGAAAAATGCAATCAGTGACCAGCATCAGTTCACCAATAAGGCCGCTAGTAGTCATAGTTATTCCCAAAGACCTACTCACAACACGGGATTATTCTTAGACAACCAACCCGTTTGGCGCCCCCAAAGGGGCCTTCCTGAGCGTGCCGTAAATGTTCTCAGGGCATGGTTATTCGAGCATTTCCTTCATCCCTACCCTACGGATTCAGACAAGCTAATGCTGGCAAAACAAACCGGTCTGTCACGAAGTCAGGTATCTAATTGGTTCATAAATGCAAGAGTAAGGCTTTGGAAGCCTATGGTGGAAGAAATACACATGCTCGAAACAAGACAGTCCCAAAAAGCGTCGCAAAGCGAAGGACAAAATGCCAACCAGACAAGCTCATCCCTTGCATCTCATCATCAGAACATGTCCACATCAACTCAGCCACATGCCCTTAACTCAAAACGAAATAGAAACGAACTTACTAATTACAATATAACCACGGCCAATGAAGAAATGCAGAACCTATGTTACAGCAATTTTCCTCATCATGCGAGCATGGCGGGAGGTGGTAGTGTCGGATCAAATGGAGGCGTCTCCTTAACATTAGGTCTTCAACAGAACATTAACGGGATAGGTGGTGGTCAAGGTTATGGCTTAGGGCTTCACGAGGTTGTTGATAGGGAAGGATATGTAGTAATGAGTGGTTTTCATGAAGCACAGAATCGGCATTTTGGAAGGGATGTGATTGGAGGGCAGCTTTTGCATGATTTCGTTGGCTGA 1665 44.5 MAEGYDQQAYDHVPQRSRRDKLRVLSSLQVEEPAAVPNYNFHNTSSSGSFPLFDPSLIPSAAGNNCVIKEERSAINHFMGFPGNCIMVDHDDHHQSPTNLPINSNPFVNYPPENGFQSLRDLNDMMVFNKLPEPLSLSLSSRPLEEINLQRYGPAAASNYNAESCRPAGSSVPLGPFTGYASILKASRFLKPVQQLLEEFCEVEGQGSIHVNEKIVADPGLTEYSSSFDYHCGDGGDDQGEGGRKKSRLISMLDEVCRRYKQYFQQMQAVVASFECVPGLGNATPYVTLAMKSMSKHFKYLKNAISDQHQFTNKAASSHSYSQRPTHNTGLFLDNQPVWRPQRGLPERAVNVLRAWLFEHFLHPYPTDSDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQSQKASQSEGQNANQTSSSLASHHQNMSTSTQPHALNSKRNRNELTNYNITTANEEMQNLCYSNFPHHASMAGGGSVGSNGGVSLTLGLQQNINGIGGGQGYGLGLHEVVDREGYVVMSGFHEAQNRHFGRDVIGGQLLHDFVG 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1625091 1627945 - Conep10aG0035100.1 Cone10ag0342 446140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0342 554 CDD homeodomain 339 400 IPR001356 GO:0003677(InterPro)
Cone10ag0342 554 Gene3D - 342 404 - -
Cone10ag0342 554 FunFam BEL1-like homeodomain protein 9 342 404 - -
Cone10ag0342 554 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 142 440 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone10ag0342 554 SMART HOX_1 339 403 IPR001356 GO:0003677(InterPro)
Cone10ag0342 554 Pfam Associated with HOX 184 306 IPR006563 -
Cone10ag0342 554 SMART prehox3 178 307 IPR006563 -
Cone10ag0342 554 MobiDBLite consensus disorder prediction 410 452 - -
Cone10ag0342 554 SUPERFAMILY Homeodomain-like 341 406 IPR009057 -
Cone10ag0342 554 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone10ag0342 554 MobiDBLite consensus disorder prediction 409 452 - -
Cone10ag0342 554 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0342 Cone-Chr10:1625091 Cone11ag1311 Cone-Chr11:9683624 1.32E-67 dispersed
Cone10ag0342 Cone-Chr10:1625091 Cone13ag1363 Cone-Chr13:9972758 5.84E-124 wgd
Cone10ag0342 Cone-Chr10:1625091 Cone19ag1357 Cone-Chr19:9008974 1.43E-121 wgd
Cone10ag0342 Cone-Chr10:1625091 Cone3ag0372 Cone-Chr3:1878156 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44178 PF04406 TP6A_N 6.20E-22 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0342 - - - 0.0