Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone10ag0385 | ATGATGGCTTCCCAACGAGAACCATGGCTAATGGAGAATGGAAACGTCAAGGGGTTGAGCAAGGAGAAGCACGGACGCACTGCTCATAACATGTCTTCCTCCTCTCTGCGCAAGAAGTCCGATCTCACTCTCGTCTCCAAGATTCACAACGGTTGGCTTCGGCTTCTGCTCATTAATCTTCAGGAGGTTATCTTGGGGACTAAACTCTCCGTTCTTTTCCCGGCTATTCCGCTAGCCATCGCCGCCTATTACTACGGTTTCGGAAGTCCATGGATATTTGCTTTGAGCTTGCTTGGACTTACTCCACTTGCTGAACGTGTTAGCTTTCTGACAGAACAAATAGCTTACTACACTGGTCCGACAGTGGGAGGGCTTCTAAATGCAACATGTGGAAATGCTACAGAGCTTATCATTGCTATACTTGCTCTAAGCCAACGTAAGATAGATGTAGTGAAGTATTCTCTACTGGGTTCTGTTCTTTCAAACCTTCTTCTAGTCCTAGGGACATCTCTCTTTTGTGGTGGCATTGCTAATATCAGAGCCGAACAGAAATATGACAGAAGGCAAGCTGATGTAAACTCGCTGCTACTGCTGCTATCATTGCTGTGCCACTTGTTACCTTTGTTGTTTCAATATGCTGGAGGCTCCGCTTCTATTACAGCACAACCCACTCTACAAATGTCGAGAGCTTGCAGCATTGTAATGCTCTTGGCTTACATAGCTTATATCATCTTCCAACTCTGGACACACCGCCAACTGTTTGAAGCACAAGAGGATGCGGAGGACAGTGATACGGTGGAAGAAACGGCGGTCATTGGATTCTGGAGTGGCTTTGCATGGCTGGTGGGAATGACAGCAGTTATTGCTTTGTTGTCCGAGTACGTGGTTGCAACAATTGAGGATGCATCTGATTCGTGGGGTTTGTCCATAAGCTTTCTGAGCATAATACTGCTACCGATCGTGGGAAACGCAGCCGAGCATGCCGGAGCAGTCATTTTTGCTTTCAAGAACAAGTTGGATATTTCTCTGGGTGTGGCTCTGGGTTCTGCTACTCAAATCGCCATGTTTGTGATCCCTTTGTGCATCGTTGTCGCATGGATTATGGGCATCAATATGGATCTTAACTTCAACCTCCTCGAAACTGGTTCACTTGCTCTTGCAATAATCGCCACAGCCTTCACCTTACAGGATGGGACTTCTCACTACATAAAAGGATTAGTTCTTCTACTCTGCTACATTGTCATTGCAGCATGCTTCTTTGTATACAAGACACCGTCGAGAGATCAAATTAATGTCGTCAACTTGGCACTTACATCGCCAAAGAGCGCAGCCTTCCAGGCTTAA | 1344 | 46.28 | MMASQREPWLMENGNVKGLSKEKHGRTAHNMSSSSLRKKSDLTLVSKIHNGWLRLLLINLQEVILGTKLSVLFPAIPLAIAAYYYGFGSPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATELIIAILALSQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANIRAEQKYDRRQADVNSLLLLLSLLCHLLPLLFQYAGGSASITAQPTLQMSRACSIVMLLAYIAYIIFQLWTHRQLFEAQEDAEDSDTVEETAVIGFWSGFAWLVGMTAVIALLSEYVVATIEDASDSWGLSISFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIAMFVIPLCIVVAWIMGINMDLNFNLLETGSLALAIIATAFTLQDGTSHYIKGLVLLLCYIVIAACFFVYKTPSRDQINVVNLALTSPKSAAFQA | 447 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1817511 | 1820133 | - | Conep10aG0039700.1 | Cone10ag0385 | 446183 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone10ag0385 | 447 | Gene3D | - | 265 | 421 | IPR044880 | - | |
| Cone10ag0385 | 447 | Gene3D | - | 120 | 264 | IPR044880 | - | |
| Cone10ag0385 | 447 | NCBIfam | calcium/proton exchanger | 74 | 420 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
| Cone10ag0385 | 447 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 20 | 425 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
| Cone10ag0385 | 447 | FunFam | Vacuolar cation/proton exchanger | 120 | 264 | - | - | |
| Cone10ag0385 | 447 | FunFam | Vacuolar cation/proton exchanger | 265 | 421 | - | - | |
| Cone10ag0385 | 447 | Pfam | Sodium/calcium exchanger protein | 89 | 248 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0385 | 447 | Pfam | Sodium/calcium exchanger protein | 277 | 420 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0385 | Cone-Chr10:1817511 | Cone20ag1377 | Cone-Chr20:8792808 | 2.11E-113 | dispersed | |
| Cone10ag0385 | Cone-Chr10:1817511 | Cone3ag0420 | Cone-Chr3:2063062 | 1.24E-294 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone10ag0385 | K07300 | - | rcu:8267509 | 649.818 |