Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0390 ATGGAAATGGCTTCCAGTCCGCGAACCGTAGAGGAGATCTTCAAGGATTACAGTGGTAGAAGAGTTGGTGTTGTTCGTGCTTTAACCTATGATGTGAACGAATTCTACAGTCTCTGTGATCCAGCTGAGGAGGTTCCACCAGAGCTGCCTGAGCCAGCACTTGGAATCAATTTTGCGAGAGATGGCATGAACCGCCAAGACTGGCTTTCACTGGTTGCTGTACACAGTGATTCTTGGTTGCTTTCTGTAGCTTTCTATCTTGGAGCTCGGCTTAACCGTAATGAAAGGAAACGTCTATTTAGCATGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACGGAAAGGAAACCTGTTAAAGACAAGCCCAGTGTGGACAGTGGAAGCAAATCTCGAGGAAGCACAAAGAGATCAAACGATGGACAAGTCAAAAGCAACCCTCGGGTTGCAGAGGAGAGTTACGAGGAGGTTGAAGATGAACACAGCGAAACCCTCTGTGGGTGCTGTGGTGGAAATTACAGTGCGGACGAGTTTTGGATTGGTTGCGATATCTGTGAGAGGTGGTTCCATGGAAAGTGTGTAAAGATAACTCCCGCCAAAGCCGATAGCATTAAACAATACAAGTGCCCGTCTTGCAGCATGAAGAAGGGGAGGCAGTAG 660 47.27 MEMASSPRTVEEIFKDYSGRRVGVVRALTYDVNEFYSLCDPAEEVPPELPEPALGINFARDGMNRQDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSMINDLPTVFEVVTERKPVKDKPSVDSGSKSRGSTKRSNDGQVKSNPRVAEESYEEVEDEHSETLCGCCGGNYSADEFWIGCDICERWFHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1840519 1843312 + Conep10aG0040200.1 Cone10ag0390 446188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0390 219 MobiDBLite consensus disorder prediction 120 156 - -
Cone10ag0390 219 Pfam PHD-finger 166 212 IPR019787 -
Cone10ag0390 219 MobiDBLite consensus disorder prediction 128 146 - -
Cone10ag0390 219 SUPERFAMILY FYVE/PHD zinc finger 155 217 IPR011011 -
Cone10ag0390 219 PANTHER CPG BINDING PROTEIN 6 42 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone10ag0390 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 213 IPR013083 -
Cone10ag0390 219 FunFam PHD finger alfin-like protein 158 214 - -
Cone10ag0390 219 CDD PHD_AL_plant 165 215 IPR044104 -
Cone10ag0390 219 ProSiteProfiles Zinc finger PHD-type profile. 163 215 IPR019787 -
Cone10ag0390 219 SMART PHD_3 165 213 IPR001965 -
Cone10ag0390 219 Pfam Alfin 9 43 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone10ag0390 219 Pfam Alfin 41 114 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone10ag0390 219 ProSitePatterns Zinc finger PHD-type signature. 166 212 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0390 Cone-Chr10:1840519 Cone7ag1605 Cone-Chr7:10940102 5.38E-93 dispersed
Cone10ag0390 Cone-Chr10:1840519 Cone3ag0428 Cone-Chr3:2086673 1.37E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44181 PF03283 PAE 1.10E-65 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0390 K26274 - cit:102609983 390.193