Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone10ag0424 | ATGACCGGTTCTCTTATAAACCTCCTTTCCAATAATAGTATGGACAATGTCGGGCAAGAGACAAATGGACACAACAGCTTGCCGACACATTACTATGATCACAAAATCCATGGAGATGGATTTCATGTCGAGATTCCGAAATTCAAATCACTACAACCTTCTTCTCTGCCCCTTTCTCCTCCTCCTGTTTCTCCTTCCTCCTACTTCTCCTCTTTCCCATCTGAACTCTTATACTCGCCTGTGTTTCTCACCTCTCCTGATATTTTCCCACCATCAACGACGAATGGAGGTTTTGCTGGCCAGAGCTTTGACTGGAGGGCTAATTCTACTAATGGTAATAACACTCAACAAGGACAGAATGGAGGAGAAGTATCCGACAATAACTTTGATTTCTCATTTCAACCACAAAGAATCTCAGGGACCACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACATCACAGACGACAACATCTGCCTCTTTCTTTCAGCCTTCTTGGTCCACCATGCTTTCTATACAGCAACAAGAGGCATGGAACCAACTTGATAACAATGAAAAACAGCCGACGACTCGACCTGATTTCTCGGTCCAAGTGAAATCAGAATTAATGGGGACTGAACAAATGAAGATGCAGAGCAATCCTGATCAAACCCAGCATTATACTGCTCAATCATCTCATTACCTAAGAGAGCAAAAAAACTCACAAGACGGATACAACTGGAGGAAGTACGGACAAAAACAAGTGAAAGGAAGCGAAAATCCTCGGAGTTATTACAAGTGCACCTTCCCGAATTGCCCTACAAAGAAGAAAGTTGAAACATCTTTGGAAGGACAGATTACTGAAATTGTATACAGAGGAAGTCATAATCATCACAAGCCTCTATCTACCAAAAGATCCAATTCAATTAATCATTCTCACTCGACCCATTTTACAGCTTCAAAAACCAATTCATCAATCTCTGACCCATCAGCTCACCCACTAAGCAATACCCAGATGGAATCTGCTCCATTGCAGGAAGATTCTAACTCTGTCTCGATTGGAGATGATGATTTCGAACCCGGTTCTCCAATGAGTAATTCCCTAGGAAATGATGAAACTGAGCAGCCACATGCGAAAATATGGAAGGGGGAAAATGAAAGTGAAGGATATTCAGCTCCCGGAAGTCAAAGTGTAAGAGAACCAAGAGTTGTTGTTCAAACGACAAGTGAAATCGATATTCTCGACGACGGCTATAGATGGAGGAAGTATGGACAGAAAGTAGTTAAGGGGAACCCGAATCCAAGGAGCTACTACAAATGTACATCACCAGCATGTCCAGTTCGGAAACATGTGGAACGAGCGGCCACGGACATGAGGGCCGTCGTTACAACATACGAAGGGAAACACAACCATGATGTTCCAGCAGCTCGTGGGAGTGGGACCTATGCAGTCAATAGGGCGCCATCGAGCAACAATGCACCTTCTACTTTACGACCCGTAGCTTGGCCTAGCAGCCACCAACAACCTCCCTTTACTCTAAGGAGATCGCAAAGTTCAGACAGTTTTGGAATCATGTTTGGAAAACAGAACGCCTCCAGCTACATGGACCAGACACAAAACTCGGGAGGTTTCTTCTCAGGGGCCAAGCAAGAATTGAAGGATGACATATTCCTCGAGTCATTTCTTTCTTAG | 1680 | 44.11 | MTGSLINLLSNNSMDNVGQETNGHNSLPTHYYDHKIHGDGFHVEIPKFKSLQPSSLPLSPPPVSPSSYFSSFPSELLYSPVFLTSPDIFPPSTTNGGFAGQSFDWRANSTNGNNTQQGQNGGEVSDNNFDFSFQPQRISGTTTATATATATATATSQTTTSASFFQPSWSTMLSIQQQEAWNQLDNNEKQPTTRPDFSVQVKSELMGTEQMKMQSNPDQTQHYTAQSSHYLREQKNSQDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVETSLEGQITEIVYRGSHNHHKPLSTKRSNSINHSHSTHFTASKTNSSISDPSAHPLSNTQMESAPLQEDSNSVSIGDDDFEPGSPMSNSLGNDETEQPHAKIWKGENESEGYSAPGSQSVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPACPVRKHVERAATDMRAVVTTYEGKHNHDVPAARGSGTYAVNRAPSSNNAPSTLRPVAWPSSHQQPPFTLRRSQSSDSFGIMFGKQNASSYMDQTQNSGGFFSGAKQELKDDIFLESFLS | 559 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1965020 | 1967387 | - | Conep10aG0043700.1 | Cone10ag0424 | 446222 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone10ag0424 | 559 | MobiDBLite | consensus disorder prediction | 301 | 347 | - | - | |
| Cone10ag0424 | 559 | SUPERFAMILY | WRKY DNA-binding domain | 233 | 296 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | MobiDBLite | consensus disorder prediction | 106 | 135 | - | - | |
| Cone10ag0424 | 559 | SUPERFAMILY | WRKY DNA-binding domain | 402 | 470 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | ProSiteProfiles | WRKY domain profile. | 232 | 296 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | Gene3D | WRKY domain | 397 | 463 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 161 | 486 | IPR044810 | GO:0003700(InterPro) | |
| Cone10ag0424 | 559 | Pfam | WRKY DNA -binding domain | 411 | 468 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | Pfam | WRKY DNA -binding domain | 238 | 294 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | SMART | WRKY_cls | 410 | 469 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | SMART | WRKY_cls | 237 | 295 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | MobiDBLite | consensus disorder prediction | 287 | 372 | - | - | |
| Cone10ag0424 | 559 | FunFam | WRKY transcription factor 33 | 397 | 463 | - | - | |
| Cone10ag0424 | 559 | ProSiteProfiles | WRKY domain profile. | 405 | 470 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone10ag0424 | 559 | FunFam | WRKY transcription factor | 224 | 297 | - | - | |
| Cone10ag0424 | 559 | Gene3D | WRKY domain | 223 | 297 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0424 | Cone-Chr10:1965020 | Cone4ag0075 | Cone-Chr4:366501 | 1.76E-129 | dispersed | |
| Cone10ag0424 | Cone-Chr10:1965020 | Cone3ag0455 | Cone-Chr3:2192890 | 5.92e-317 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44185 | PF00415 | RCC1 | 2.20E-09 | CL0186 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone10ag0424 | K13424 | - | rcu:8263140 | 459.529 |