Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0424 ATGACCGGTTCTCTTATAAACCTCCTTTCCAATAATAGTATGGACAATGTCGGGCAAGAGACAAATGGACACAACAGCTTGCCGACACATTACTATGATCACAAAATCCATGGAGATGGATTTCATGTCGAGATTCCGAAATTCAAATCACTACAACCTTCTTCTCTGCCCCTTTCTCCTCCTCCTGTTTCTCCTTCCTCCTACTTCTCCTCTTTCCCATCTGAACTCTTATACTCGCCTGTGTTTCTCACCTCTCCTGATATTTTCCCACCATCAACGACGAATGGAGGTTTTGCTGGCCAGAGCTTTGACTGGAGGGCTAATTCTACTAATGGTAATAACACTCAACAAGGACAGAATGGAGGAGAAGTATCCGACAATAACTTTGATTTCTCATTTCAACCACAAAGAATCTCAGGGACCACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACATCACAGACGACAACATCTGCCTCTTTCTTTCAGCCTTCTTGGTCCACCATGCTTTCTATACAGCAACAAGAGGCATGGAACCAACTTGATAACAATGAAAAACAGCCGACGACTCGACCTGATTTCTCGGTCCAAGTGAAATCAGAATTAATGGGGACTGAACAAATGAAGATGCAGAGCAATCCTGATCAAACCCAGCATTATACTGCTCAATCATCTCATTACCTAAGAGAGCAAAAAAACTCACAAGACGGATACAACTGGAGGAAGTACGGACAAAAACAAGTGAAAGGAAGCGAAAATCCTCGGAGTTATTACAAGTGCACCTTCCCGAATTGCCCTACAAAGAAGAAAGTTGAAACATCTTTGGAAGGACAGATTACTGAAATTGTATACAGAGGAAGTCATAATCATCACAAGCCTCTATCTACCAAAAGATCCAATTCAATTAATCATTCTCACTCGACCCATTTTACAGCTTCAAAAACCAATTCATCAATCTCTGACCCATCAGCTCACCCACTAAGCAATACCCAGATGGAATCTGCTCCATTGCAGGAAGATTCTAACTCTGTCTCGATTGGAGATGATGATTTCGAACCCGGTTCTCCAATGAGTAATTCCCTAGGAAATGATGAAACTGAGCAGCCACATGCGAAAATATGGAAGGGGGAAAATGAAAGTGAAGGATATTCAGCTCCCGGAAGTCAAAGTGTAAGAGAACCAAGAGTTGTTGTTCAAACGACAAGTGAAATCGATATTCTCGACGACGGCTATAGATGGAGGAAGTATGGACAGAAAGTAGTTAAGGGGAACCCGAATCCAAGGAGCTACTACAAATGTACATCACCAGCATGTCCAGTTCGGAAACATGTGGAACGAGCGGCCACGGACATGAGGGCCGTCGTTACAACATACGAAGGGAAACACAACCATGATGTTCCAGCAGCTCGTGGGAGTGGGACCTATGCAGTCAATAGGGCGCCATCGAGCAACAATGCACCTTCTACTTTACGACCCGTAGCTTGGCCTAGCAGCCACCAACAACCTCCCTTTACTCTAAGGAGATCGCAAAGTTCAGACAGTTTTGGAATCATGTTTGGAAAACAGAACGCCTCCAGCTACATGGACCAGACACAAAACTCGGGAGGTTTCTTCTCAGGGGCCAAGCAAGAATTGAAGGATGACATATTCCTCGAGTCATTTCTTTCTTAG 1680 44.11 MTGSLINLLSNNSMDNVGQETNGHNSLPTHYYDHKIHGDGFHVEIPKFKSLQPSSLPLSPPPVSPSSYFSSFPSELLYSPVFLTSPDIFPPSTTNGGFAGQSFDWRANSTNGNNTQQGQNGGEVSDNNFDFSFQPQRISGTTTATATATATATATSQTTTSASFFQPSWSTMLSIQQQEAWNQLDNNEKQPTTRPDFSVQVKSELMGTEQMKMQSNPDQTQHYTAQSSHYLREQKNSQDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVETSLEGQITEIVYRGSHNHHKPLSTKRSNSINHSHSTHFTASKTNSSISDPSAHPLSNTQMESAPLQEDSNSVSIGDDDFEPGSPMSNSLGNDETEQPHAKIWKGENESEGYSAPGSQSVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPACPVRKHVERAATDMRAVVTTYEGKHNHDVPAARGSGTYAVNRAPSSNNAPSTLRPVAWPSSHQQPPFTLRRSQSSDSFGIMFGKQNASSYMDQTQNSGGFFSGAKQELKDDIFLESFLS 559
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 1965020 1967387 - Conep10aG0043700.1 Cone10ag0424 446222
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0424 559 MobiDBLite consensus disorder prediction 301 347 - -
Cone10ag0424 559 SUPERFAMILY WRKY DNA-binding domain 233 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 MobiDBLite consensus disorder prediction 106 135 - -
Cone10ag0424 559 SUPERFAMILY WRKY DNA-binding domain 402 470 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 ProSiteProfiles WRKY domain profile. 232 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 Gene3D WRKY domain 397 463 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 161 486 IPR044810 GO:0003700(InterPro)
Cone10ag0424 559 Pfam WRKY DNA -binding domain 411 468 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 Pfam WRKY DNA -binding domain 238 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 SMART WRKY_cls 410 469 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 SMART WRKY_cls 237 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 MobiDBLite consensus disorder prediction 287 372 - -
Cone10ag0424 559 FunFam WRKY transcription factor 33 397 463 - -
Cone10ag0424 559 ProSiteProfiles WRKY domain profile. 405 470 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0424 559 FunFam WRKY transcription factor 224 297 - -
Cone10ag0424 559 Gene3D WRKY domain 223 297 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0424 Cone-Chr10:1965020 Cone4ag0075 Cone-Chr4:366501 1.76E-129 dispersed
Cone10ag0424 Cone-Chr10:1965020 Cone3ag0455 Cone-Chr3:2192890 5.92e-317 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44185 PF00415 RCC1 2.20E-09 CL0186 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0424 K13424 - rcu:8263140 459.529