Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0437 ATGGAGAACAAAGGGAGTATTTTGATGGATCGCTATGAATTAGGAAGGTTGTTGGGCCAGGGAACCTTTGCTAAGGTTTACTATGCAAAAAACATCAAAACTGGCATGACTATGGCCATTAAGGTCATTGACAAGGAGAAGGTCCTCAAGGTTGGATTGATTGATCAGATTAAGCGAGAAATTTCAGTGATGAGACTGGTTAGGCATCCTAATGTGGTGGAGCTTTATGAGGTTATGGCCAGCAAAACCAAGATTTACGTTGTCATGGAGTATGTTAAAGGGGGTGAGCTATTCAACAAGGTAGCCAAAGGAAAGCTCAAGGAAGATGCTGCGAGGAAGTATTTCCAGCAACTGATCAGTGCTGTTGATTACTGTCACAGCAGGGGGGTCTATCATCGTGATTTGAAACCAGAGAACCTACTGTTAGATGAGCATGGTAATCTAAAGGTTTCTGATTTTGGGTTGAGTGCCTTTGCTGAATCTAAACACCAAGATGGACTGCTTCATACAACATGTGGGACCCCTGCCTATGTTGCTCCGGAAGTGATTAACAGAAGAGGCTACGATGGAGCGAAAGCTGACATTTGGTCATGCGGGGTGATCCTATTTGTTCTCCTGGCTGGTTATCTTCCATTTCATGACCCAAATTTAATGGAAATGTATAGGAAGATTGGTAAGGGGGAATTTAAATTTCCTAACTGGTTTACGCCAGAGGAGCGCAGGTTGCTGTCAAAAATCTTGGATCCCAACCCAAACACCAGGATATCTATGGCTAAGATAATGGAAAGTTCTTGGTTCAGAAAGGGATTACAACCAAAACCTCAACTTAATGCGACAGAGGGGAAAGAAATCGTCCCTTTTGATGTCGATGCAGCATTTGGGATGAATGAGAATAGACCTCTTGGAGAGGCGAAGCAAGAGTCTGCCAGACCATCTAATTTGAATGCTTTTGAAATAATATCATTTTCTGCAGGATTTGATCTGTCTGGTTTATTCGAGGAGACTCAGAAAAAGAGAGAAGTACGATTCACATCCAGCAAGAGTGCCTCCACTATCATCTCCAGGCTGGAAGATATTGCGAAGCGATTCAGATTGAAGGTGAAAAAGAAAGATGGTGGGTTGATAAAACTGGAAGGGTCGAAGGAAGGTCGAAAAGGAGCCTTAGCCATTGATGCAGAGATATTTGAGATCACCCCATTATACCATCTGGTGGAAATGAAGAAGTCGAGTGGAGATACCTTGGAATATCAGAAGATAATGGGCGAGGAGATTCGACCAGCTCTCAAAGACATTGTTTGGGCCTGGCACGGGGAGCAAAACCAGCAACAATTACCGCTTAGAGAAGAGCAAGTACAACAGTAG 1362 43.47 MENKGSILMDRYELGRLLGQGTFAKVYYAKNIKTGMTMAIKVIDKEKVLKVGLIDQIKREISVMRLVRHPNVVELYEVMASKTKIYVVMEYVKGGELFNKVAKGKLKEDAARKYFQQLISAVDYCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLSAFAESKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILFVLLAGYLPFHDPNLMEMYRKIGKGEFKFPNWFTPEERRLLSKILDPNPNTRISMAKIMESSWFRKGLQPKPQLNATEGKEIVPFDVDAAFGMNENRPLGEAKQESARPSNLNAFEIISFSAGFDLSGLFEETQKKREVRFTSSKSASTIISRLEDIAKRFRLKVKKKDGGLIKLEGSKEGRKGALAIDAEIFEITPLYHLVEMKKSSGDTLEYQKIMGEEIRPALKDIVWAWHGEQNQQQLPLREEQVQQ 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2031148 2033616 + Conep10aG0045200.1 Cone10ag0437 446235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0437 453 CDD CIPK_C 315 429 - -
Cone10ag0437 453 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 426 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone10ag0437 453 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cone10ag0437 453 Pfam NAF domain 311 369 IPR004041 GO:0007165(InterPro)
Cone10ag0437 453 Gene3D Transferase(Phosphotransferase) domain 1 4 315 - -
Cone10ag0437 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0437 453 SUPERFAMILY Protein kinase-like (PK-like) 8 276 IPR011009 -
Cone10ag0437 453 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cone10ag0437 453 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0437 453 Gene3D Kinase associated domain 1, KA1 316 434 - -
Cone10ag0437 453 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Cone10ag0437 453 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165(InterPro)
Cone10ag0437 453 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0437 453 FunFam Non-specific serine/threonine protein kinase 2 289 - -
Cone10ag0437 453 CDD STKc_SnRK3 11 265 - -
Cone10ag0437 453 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0437 Cone-Chr10:2031148 Cone1ag0772 Cone-Chr1:53809907 3.29E-223 dispersed
Cone10ag0437 Cone-Chr10:2031148 Cone19ag1441 Cone-Chr19:9385129 3.19E-139 wgd
Cone10ag0437 Cone-Chr10:2031148 Cone3ag0468 Cone-Chr3:2270645 2.05E-303 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81811 PF03759 PRONE 1.10E-166 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0437 K07198 - cit:102619997 745.732