Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0439 ATGAAAGTAACGCAGCCGGAATTCCTTTTAAGAAAGCGACGGCCGCCGGCGGGAGCATTTATGGCCCCGAAATGGTCCGGCCTCAATCTCCTTGGATCGCTTCATGCTCTTTGCCTTGAAATCTCCGCTCTGAAACCGCATCAATTTCTTTTTAAACGCAATTCGCACTCGGCGATTCGTAAATCCGAGGTCCTTGCTATATATTTCGAAGAGCTTTTTCACAAACCGATATCCTCCTTCTCTCCCTCGGCCAAACTCTGCTTCGAAGAAATGTACATGGTTTTGCAGAGAGTCAAAACGTTTATCGAGGATTGTTCTAACGGAGCCAAGATCTGGCTACTCATGCAGAACGAATCGCTGGCCAAAGATTTTAAGGAGCTTCTATTGGATTTGTCCACTCTCCTGGATATTTTACCGGTGACACAGGTTGAATTGAGTGAAGATACCGTAGAGCATGTTTTTTTACTCAGAAAGCAATGCTCCGAGTCGGAAGCTTGTGTGGATCTGGAAGATGACAATCTCAAACGGCAGGTGTTGACGATGCTCGATCGAATTAAAAATGAGATAGTACCTGACGATTCCGAGGTTTCTGAAATTTTCTCAAGGTTGGGAATTCGAGACGCCTCGAGTTGTAGAGAGGAACTGGAGAATCTGGAAGACGAATTAGTTCAGGATCAGATAGATCAAAAATCCAAATCAGAGATGATCGCTCTAATCGGGCTTGTTCGCTATGCAAAATGCGTTCTGTTCGGTGCATCGACGGCCATCTATGACGGCCGTCGAAAGAAAACAACCACAGATACAGTTCCTCCCGCCGATTTCAGGTGTCCTATCAGCCTCGATTTGATGCGTGATCCCGTTGTGGTTGCAACAGGACAGACGTATGATCGATCATCTATCAATCTATGGATTGAATCCGGACACAGCACGTGTCCAAAGACGGGTCAGACCCTGACACACACGGACCTAATACCTAATCATGCTTTGAGGAACTTGATATCAATATGGTGCCGTCAACACAGAATCCCCTTGGATACAAATGGCGAGCATAAAGAGAAAGTCAACGAAATCCCAACGAATAAGACTGCGTTGGAAGCAACCAGAATGACAGCGTCATATCTCATTAAGAAGCTCTTTCAATCGGAATCGTTGGAGGCTGCAAACGCCGTCATCTACGAGCTCCGTTCACTTGCCAAGACAGACTCGAATAGCCGAACCTGCATTGCAGAAGCCGAAGCTATACCGTTACTTGTACGTTACCTAAATCAGAGTCAGGAGCACCCAAACCTTCAACTAAACGCCGTTACAGCGATCCTCAACCTTTCTATTCTCCATGCGAACAAAAAGCGGATCATGGAAGATGATAGAGCTCTTAATGGAGTCACCATGGTTCTGCAGGTGGGCGCCACGTGGGAAGCAAAAGGAAACGCCGCAGCCTTGATTTACAGCTTATCGGGAGAACAGTCGTATAGAAGGAAACTGGGGAGGATGTCAGGTGTCGTAAGGGGATTGCTGGATTTGGCTAGAGATGGGCCCACAATTACAAAGAGGGATGCTTTGGTGGCCATTATGAATTTGGCCGGGGACAAGGAGACGGTTGGGAGGTTGATCGAAGGCGGGGTGATGAACACGATCAGTTATCTGATGGATGGGGGGCTGCTGGAAGAGGCAGTAACAATACTTGAAGTGGTGGTGAGGAGGGGTGGGATACTAGCAGCTGCTTCTGCTTACAATTTGATGGGGAAATTGTTTGTGATGTTAAGGGATGGATCCGACAGAGCAAGAGAAAGTGCGGCGGCTGTGCTTGTCACTGTCTGTAGGAAAGTGGGGCAGGAAATGGTGGCGGAATTAGCAGGGATTCCAGGGATAGAAAGAGTGGTGTGGGAACTAATGGGAAGTGGGACCGGTAGAGGTAGAAGGAAAGCCGCTTCACTGTTGAGGATTCTCAGGCGATGGGCTGCCGGTTTGGATGTTTCTTCTCATCATTCACTAGTCCACCTGGAATACTCAACAGCATTCGTGAGTTCATCGACAGCTGCAGTGCCCATCTAG 2052 47.9 MKVTQPEFLLRKRRPPAGAFMAPKWSGLNLLGSLHALCLEISALKPHQFLFKRNSHSAIRKSEVLAIYFEELFHKPISSFSPSAKLCFEEMYMVLQRVKTFIEDCSNGAKIWLLMQNESLAKDFKELLLDLSTLLDILPVTQVELSEDTVEHVFLLRKQCSESEACVDLEDDNLKRQVLTMLDRIKNEIVPDDSEVSEIFSRLGIRDASSCREELENLEDELVQDQIDQKSKSEMIALIGLVRYAKCVLFGASTAIYDGRRKKTTTDTVPPADFRCPISLDLMRDPVVVATGQTYDRSSINLWIESGHSTCPKTGQTLTHTDLIPNHALRNLISIWCRQHRIPLDTNGEHKEKVNEIPTNKTALEATRMTASYLIKKLFQSESLEAANAVIYELRSLAKTDSNSRTCIAEAEAIPLLVRYLNQSQEHPNLQLNAVTAILNLSILHANKKRIMEDDRALNGVTMVLQVGATWEAKGNAAALIYSLSGEQSYRRKLGRMSGVVRGLLDLARDGPTITKRDALVAIMNLAGDKETVGRLIEGGVMNTISYLMDGGLLEEAVTILEVVVRRGGILAAASAYNLMGKLFVMLRDGSDRARESAAAVLVTVCRKVGQEMVAELAGIPGIERVVWELMGSGTGRGRRKAASLLRILRRWAAGLDVSSHHSLVHLEYSTAFVSSSTAAVPI 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2040814 2042865 + Conep10aG0045400.1 Cone10ag0439 446237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0439 683 Pfam U-box domain 271 341 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0439 683 Gene3D - 366 647 IPR011989 -
Cone10ag0439 683 Pfam Armadillo/beta-catenin-like repeat 405 442 IPR000225 GO:0005515(InterPro)
Cone10ag0439 683 SUPERFAMILY RING/U-box 266 343 - -
Cone10ag0439 683 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0439 683 SUPERFAMILY ARM repeat 375 649 IPR016024 -
Cone10ag0439 683 FunFam RING-type E3 ubiquitin transferase 268 343 - -
Cone10ag0439 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 452 IPR000225 GO:0005515(InterPro)
Cone10ag0439 683 Coils Coil 208 228 - -
Cone10ag0439 683 CDD RING-Ubox_PUB 271 323 IPR045210 -
Cone10ag0439 683 SMART Ubox_2 273 336 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0439 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 353 IPR013083 -
Cone10ag0439 683 PANTHER U BOX DOMAIN-CONTAINING 51 653 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0439 Cone-Chr10:2040814 Cone13ag1034 Cone-Chr13:8591244 7.93E-80 dispersed
Cone8ag0814 Cone-Chr8:8171749 Cone10ag0439 Cone-Chr10:2040814 7.84E-15 dispersed
Cone5ag1640 Cone-Chr5:11573290 Cone10ag0439 Cone-Chr10:2040814 2.54E-114 transposed
Cone10ag0439 Cone-Chr10:2040814 Cone11ag1203 Cone-Chr11:9100248 1.10E-95 wgd
Cone10ag0439 Cone-Chr10:2040814 Cone13ag1442 Cone-Chr13:10325211 3.29E-26 wgd
Cone10ag0439 Cone-Chr10:2040814 Cone18ag0385 Cone-Chr18:1865327 2.94E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0439 - - - 0.0