Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0444 ATGGCGTCGAGAAGCTGCATGAATGTGGCGTGCGGTACGTCGGAGTCGATCGAATGGAAGAAAGGTTGGGCTCTGCGATCCGGCGAGTTCGCCACTCTATGCGACAAGTGCGGGCATTCTTATGAACAATCGAGTTTTTGTGAGGTGTTCCATTCCACAGAGTCGGGTTGGAGGGAATGCACACTCTGTGGAAAGCGTCTCCATTGTGGATGCATTGCCTCCAGATTCATGATGGAGCTACTTGACAATGGGGGCGTGAACTGCATTAACTGTGCGAAGAATTCAGCGCTTCATTCTATTGGAACTGATGAAAAGTGTAACGGGTTTGGCACCTCCAAAATTGATAATGTGGGTGATCTGCAAATGCAATCTGCTGAAGATGGCCAATTAAATGGTAGTGTTGACAAAATGACATTTATGCAATTAGGGAATCATACAGACCGTAACGAGCTTAGGCACTTTCTCCATTCTCAAGATAATGGTACAAGGGGATCCGGAAAAATGAAACAGGAGGAAGTATATCCTTCCATTGGAGAGACTATAAGAGTTCTTTCCTCGGATTTTAGACGGGTAGCAGATGGGTCTTGTGAAGCAGCCAGAGAAGACATCTGTAAAGAACATACCAGAACAAAAGATATGAATGAATCACTCGCACAGACCAGTTTGAATATGAATCTGGGTTCAGGAAGCTCAACTGCCTTTGGTGGTGTTACCATAGATGGAAGCGAGCACAGTAAGGCATCCTCTCCATTCCAACAAGGTCTCAGATCACCCCATATTTTGCCAAAGCACCCGAGGTCAGTCCTTGCTACGGTCTTGGAGGCAAATGCTGGCATGGTTTCACAAATTCGCGTTGCAAGGCCACCTGCTGAAGGTCGGGGACGGAATCAGTTACTCCCTCGTTATTGGCCCAGAATTACAGAGCAAGAATTACAGCAAATATCTGGATCTTCTAATTCCACAGTAGTGCCATTGTTTGAAAAGATGCTCAGTGCCAGTGATGCTGGCAGAATTGGCCGTTTGGTTCTCCCAAAAGCTTGTGCAGAAGCATATTTTCCACCTATATCTCAACCAGAGGGTCTTCCCATAAGAATTCAAGATGTGAAGGGAAAAGAATGGGTCTTTCAGTTCAGATTTTGGCCTAACAATAACAGTAGGATGTATGTGTTAGAGGGGGTAACTCCATGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGTAACTTTTAGCCGTATGGATCCTGAAGGAAAACTTATCATGGGATTCAGGAGAGCATCGAATTCTGCTGGAATGCAGGGAAGCACAGATCCACACCTAAATGCACTGTCCAAGCACATCAATTCCGGCAGTGAGGATATTAGCTGGCTTAAAGCTGAGAGGCATGATGACGGGAAAGAGGAGGGATTGCTGCAGCCACCAGCATTTGTACCAGAAAGAAAAAGAGCTCGAAATATTGGGTCCAAAAGTAAGAGGTTGCTCATTGATAGCCAAGATGCTCTGGAGCTCAAACTTACATGGGAGGAGGCACAGGATTTGCTGCGTCCTCCGCCATCTGTCAAGCCCAGCACTGTCATTGTGGAGAATCATGAATTTGAAGAATATGATGAACCACCAGTTTTTGGGAAGAAAAGCATATTTGTAGCTTGTTCAACTGGGGTAACAGAACAATGGTCTCAGTGTGACAGCTGTTCTAAGTGGCGGAGGTTACCAGTTGATGTACTTCTCTCCTCCAAGTGGACATGTGCTGAAAATATGTGGGATGGAAGAAGGAATTCATGTTCTGCAGCTGATGAATTGAACCCGAGGGAACAGGAAGATCTTCTCAGGCTGAATAAAGAATTCAAAAGACACAGAATACTGAATAGCCACAAGGGGATACAGGATCAGCAATCATCTGGTCTAGATGCTCTGGCCAATGCAGCAGTCCTAAATGTGAGTGAGCCAGCAGTCACTGCCTCAGTTGCAACCACAACGAGGCACCCAAGGCATCGTCCTGGTTGCTCCTGTATTGTGTGCATACAGCCTCCAAGCGGGAAGGGAAAGCACAAGCCCACATGCACCTGCACCGTGTGCATGACCGTTAAGCGTCGCTTTAAAACATTAATGATGCGAAAGAAGAAGCGTCAATCAGAGCGCGAAGCAGAGATTGCCCAGAGAAATCAACTCAAATGGGGACCAGGGAATGAAACAGAGGTAGTAGACACCTCCTCTAGGCGTGAATCACCAAATCTTGATACTTCAGAGAATGAAGCCCGGTCAGCAAATGAGTTAGAAGAATCATCGAAGATTCAAATTAAATTGGGGGAAACCAGTAAGGGACATTTAGATTTGAATTTCCGTCCTGATCGAGAGGAACTGCAAGTCCAGTCAGCAAACGGCATGAGCCTGATCAGCCTTGTCCAAGTAGCAAGCCTGCCTCTAGAGACATATCTTCAGCAGAATGGTCTTTCAAGTTTGATCTCAGAGCCAGAAGCAAGTTCAGCAACACATCTGCTACCAGCAACTGATAATGAGGGTGAAGGACCAGGAATGCATGATAATGATGATGATGGAAATGTCATATCTGCCGCACAAGAGCAGGAAAGCAGGTGTGACGAAGATTGTGAGCCAGATCAAAGCCAAAATCAATCCTAA 2637 46.15 MASRSCMNVACGTSESIEWKKGWALRSGEFATLCDKCGHSYEQSSFCEVFHSTESGWRECTLCGKRLHCGCIASRFMMELLDNGGVNCINCAKNSALHSIGTDEKCNGFGTSKIDNVGDLQMQSAEDGQLNGSVDKMTFMQLGNHTDRNELRHFLHSQDNGTRGSGKMKQEEVYPSIGETIRVLSSDFRRVADGSCEAAREDICKEHTRTKDMNESLAQTSLNMNLGSGSSTAFGGVTIDGSEHSKASSPFQQGLRSPHILPKHPRSVLATVLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITEQELQQISGSSNSTVVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPIRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRRASNSAGMQGSTDPHLNALSKHINSGSEDISWLKAERHDDGKEEGLLQPPAFVPERKRARNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPSVKPSTVIVENHEFEEYDEPPVFGKKSIFVACSTGVTEQWSQCDSCSKWRRLPVDVLLSSKWTCAENMWDGRRNSCSAADELNPREQEDLLRLNKEFKRHRILNSHKGIQDQQSSGLDALANAAVLNVSEPAVTASVATTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCTVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLKWGPGNETEVVDTSSRRESPNLDTSENEARSANELEESSKIQIKLGETSKGHLDLNFRPDREELQVQSANGMSLISLVQVASLPLETYLQQNGLSSLISEPEASSATHLLPATDNEGEGPGMHDNDDDGNVISAAQEQESRCDEDCEPDQSQNQS 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2059162 2064161 + Conep10aG0045900.1 Cone10ag0444 446242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0444 878 Pfam CW-type Zinc Finger 558 599 IPR011124 GO:0008270(InterPro)
Cone10ag0444 878 Gene3D - 304 431 IPR015300 -
Cone10ag0444 878 ProSiteProfiles B3 DNA-binding domain profile. 326 427 IPR003340 GO:0003677(InterPro)
Cone10ag0444 878 MobiDBLite consensus disorder prediction 703 766 - -
Cone10ag0444 878 MobiDBLite consensus disorder prediction 833 878 - -
Cone10ag0444 878 ProSiteProfiles Zinc finger CW-type profile. 552 602 IPR011124 GO:0008270(InterPro)
Cone10ag0444 878 SUPERFAMILY DNA-binding pseudobarrel domain 323 425 IPR015300 -
Cone10ag0444 878 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 827 - -
Cone10ag0444 878 Pfam B3 DNA binding domain 326 426 IPR003340 GO:0003677(InterPro)
Cone10ag0444 878 FunFam B3 domain-containing transcription repressor VAL1 304 431 - -
Cone10ag0444 878 SMART B3_2 326 427 IPR003340 GO:0003677(InterPro)
Cone10ag0444 878 CDD B3_DNA 324 425 IPR003340 GO:0003677(InterPro)
Cone10ag0444 878 Gene3D - 555 610 - -
Cone10ag0444 878 MobiDBLite consensus disorder prediction 734 766 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0444 Cone-Chr10:2059162 Cone7ag0079 Cone-Chr7:345413 1.60E-265 dispersed
Cone10ag0444 Cone-Chr10:2059162 Cone3ag0477 Cone-Chr3:2322193 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44186 PF07714 PK_Tyr_Ser-Thr 1.30E-23 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0444 K09287 - vvi:100251742 1091.26