Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0452 ATGAAGCTATTATTCTTCTCTGTGCCACTTCTCCTCTTGCTTGTGTATTTCCCTCCCCATGTTATATCTGACCTAAACTCAGACAAGCAAGCCCTTCTTGATTTCATTGCCGCTGTTCCTCACGGTCGTAAAGTTAACTGGAATAAATCTAGCCCAGTTTGCACTTCTTGGGTTGGCATTACTTGTACACGAGATCAGGCAAGAGTGATTGCTGTGCGGCTCCCTGCTGTTGGCTTGTATGGTACACTTCCAGCCCACACACTTTCAAGACTCGATGCTCTCAGAATCCTTAGCCTTCGGTCTAACCGTCTCAATGGGAACCTTCCATCTGACGTTTTATCCATTCCGTCCCTCCAATCCTTGTACCTTCAGCATAACAACTTTTCGGGTGAGATCCCTCCTTCCTTATCTCCCCAGCTCACCTTTCTCGATCTGTCATTCAACCTCCTGACAGGCCACATTCCGGCAGCAGTTCAAAATTTGACACAGCTCACTAGCCTTAACCTTCAAAATAATTCCCTTTCCGGATCTATACCTGATGTGCATCTCCCTCGGCTTAGGAATCTGAACTTGAGCTATAACAACCTAAATGGTACAATTCCTTCTGCTCTGAAAACATTTCCCCCATCCTCTTTCGAAGGGAATTCTCTGCTATGTGGAGCACCACTCAGCCAGTGTTCTTCGGTCACACCCTCACCCTCCCCTTCTCCCACTAATCTACCCCCTACCCCACCCGCCTCACCAAAACCAAAGAACAAGAGGAAACTCAATACTCGAGCAATTATTGCCATTGCAGTGGGGGGTTCTGCGTTACTGTTTATCCTATTTCTGATAATTCTAATATGCTGTTTGAAGAAAAAAGATAGTGAAGGTAGTGGTGTCGTGAAAGGGAAGAGTAAAAGGAGCGAGCAACCAAAGGAGGACTTTGGGAGCGGGGTGCAAGAGGCTGAGAAGAACAAGTTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGACCTAGAGGATTTGTTGAGAGCTTCTGCAGAGGTGCTCGGAAAGGGGAGTTATGGAACCACTTATAAGGCTATCTTGGAGGAAGGGACAACTGTAGTTGTGAAGAGGTTGAAAGAAGTTGTGGTTGGTAAAAGGGAATTCGAACAGCAGATGGAGATTGTGGGGAGGGTTGGTCAGCATCCAAATGTCATGCCACTACGCGCTTATTATTATTCCAAGGATGAGAAACTTTTGGTTTATGATTACGTACCAGCTGGTAGTTTCTCTGCATTACTGCATGTTCCCTCTGCAGGAAACAAATTAAGCGGACAATCACCCCCGGACTGGGAAACCAGGGTAAAGATCTCACTTGGATTTGCAAGAGGCGTTGCACATATCCATTCCTCAAGCGGGGGCAAACTTGTCCATGGCAACATCAAATCCTCTAATGTCCTTCTTACACAAGACCTGAATGGCTGCATCTCAGATTTCGGCCTAACATCTGTCATCAACTTCCCCACTGTGCCCTCAAGAAGTGCAGGCTACCGAGCTCCCGAGGTGATTGACATGCGAAAATCAACTCAGAAGTCAGATGTATACAGCTTGGGCGTAGTTCTTCTAGAGATGTTAACAGGAAAAGCACCGGTCCAATCCCCAGGGCGAGATGATGTTGCAGACCTTCCCAGGTGGGTCCAGTCTGTGGTCAGAGAGGAGTGGACCTCAGAAGTATTTGATATCGAGCTAATGAAGTATCAGAATATAGAAGAAGAGTTGGTCCAAATGCTTCAGATAGCAATGGCATGCGTGGCCAGGATGCCTGATATGAGACCTTCCATGGATGAAGTTGTTAGGATGATCGAGGAAATCAGGCCGTCTGGTTCCGAAACTCGGCCTTCTTCCGAGGACAACAAATCCAAGGATGACTTAACTACTCAGATCACACCATAA 1920 46.56 MKLLFFSVPLLLLLVYFPPHVISDLNSDKQALLDFIAAVPHGRKVNWNKSSPVCTSWVGITCTRDQARVIAVRLPAVGLYGTLPAHTLSRLDALRILSLRSNRLNGNLPSDVLSIPSLQSLYLQHNNFSGEIPPSLSPQLTFLDLSFNLLTGHIPAAVQNLTQLTSLNLQNNSLSGSIPDVHLPRLRNLNLSYNNLNGTIPSALKTFPPSSFEGNSLLCGAPLSQCSSVTPSPSPSPTNLPPTPPASPKPKNKRKLNTRAIIAIAVGGSALLFILFLIILICCLKKKDSEGSGVVKGKSKRSEQPKEDFGSGVQEAEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEVVVGKREFEQQMEIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPAGSFSALLHVPSAGNKLSGQSPPDWETRVKISLGFARGVAHIHSSSGGKLVHGNIKSSNVLLTQDLNGCISDFGLTSVINFPTVPSRSAGYRAPEVIDMRKSTQKSDVYSLGVVLLEMLTGKAPVQSPGRDDVADLPRWVQSVVREEWTSEVFDIELMKYQNIEEELVQMLQIAMACVARMPDMRPSMDEVVRMIEEIRPSGSETRPSSEDNKSKDDLTTQITP 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2098194 2102116 - Conep10aG0046700.1 Cone10ag0452 446250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0452 639 ProSitePatterns Protein kinases ATP-binding region signature. 344 375 IPR017441 GO:0005524(InterPro)
Cone10ag0452 639 MobiDBLite consensus disorder prediction 234 249 - -
Cone10ag0452 639 SUPERFAMILY Protein kinase-like (PK-like) 342 611 IPR011009 -
Cone10ag0452 639 MobiDBLite consensus disorder prediction 612 632 - -
Cone10ag0452 639 FunFam pollen receptor-like kinase 1 306 413 - -
Cone10ag0452 639 Gene3D Ribonuclease Inhibitor 182 227 IPR032675 -
Cone10ag0452 639 Pfam Protein kinase domain 342 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0452 639 MobiDBLite consensus disorder prediction 228 253 - -
Cone10ag0452 639 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Cone10ag0452 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 414 624 - -
Cone10ag0452 639 Gene3D Phosphorylase Kinase; domain 1 306 413 - -
Cone10ag0452 639 Gene3D Transferase(Phosphotransferase) domain 1 415 636 - -
Cone10ag0452 639 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0452 639 MobiDBLite consensus disorder prediction 290 312 - -
Cone10ag0452 639 MobiDBLite consensus disorder prediction 612 639 - -
Cone10ag0452 639 CDD STKc_IRAK 344 613 - -
Cone10ag0452 639 FunFam Nuclear pore complex protein NUP107 25 180 - -
Cone10ag0452 639 PANTHER OS05G0588300 PROTEIN 6 627 IPR050994 -
Cone10ag0452 639 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515(InterPro)
Cone10ag0452 639 Pfam Leucine Rich Repeat 117 137 IPR001611 GO:0005515(InterPro)
Cone10ag0452 639 SUPERFAMILY L domain-like 38 224 - -
Cone10ag0452 639 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0452 Cone-Chr10:2098194 Cone12ag0265 Cone-Chr12:1407746 1.68E-158 dispersed
Cone10ag0452 Cone-Chr10:2098194 Cone3ag0485 Cone-Chr3:2368876 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81815 PF00139 Lectin_legB 6.70E-50 CL0004 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0452 - - - 0.0