Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0454 ATGCTGAAGCAGAGAGTTGGGGCGGACCTTGTTATCCTGTTGTGTTTCTGCTTCACGCTCCAATCAATTTCACAGAAAACACATCCTTTGGAAGTGCGTGCTCTGCTAGCAGTACAGAGAAAGCTTGTTGATCCAATGAACCACCTTGCAAGCTGGAACCGAGGGGATCCCTGCACATCAAATTGGACCGGTGTTTTATGTTTCTCTGGAACTGATAATTATTTCCATATCAGAAACCTGCATCTACTGAACATGAATCTCTCTGGAGTTTTGTCACCCGGGATTGGCCAACTCTCCCATCTTCGAATATTAGATTTCATGTGGAATGACCTAACTGGAACCATACCCAGGGAGATTGGTTATATGACATCCTTGGAACTCTTGCTCTTAAATGGCAACAAGCTATCAGGCCCTCTTCCTGATGAACTGGGATACCTTTCTAATTTAAACAGACTCCAAGTAGACCTGAACCAAATTTCAGGGCCGATACCAAAATCATTCGCAAACATGACAAGTGTGAAGCACTTCCACATGAATAACAACTCCTTAAGTGGTGAAGTTCCATCTGAGCTTTCCAGATTACCCTCTTTACTTCACCTGCTTGTGGATAACAATAACTTGTCGGGAAATCTTCCACCAGAGTTCTCCAACTTTCCCGAGCTGCGCATACTACAACTTGATAACAACAACTTCAGAGGGGAAATTCCAGTCACTTATGGAAACTTTACTGCACTAGTGAAATTAAGTCTTAGGAATTGCAGCTTGGAGGGACCTATTCGTGATCTAAGCACGATACAAAATCTTAGTTACTTGGATCTTAGTTGGAATCGTTTTTCTGGACCCATACCATCAAATAAGCTTTCTGAAAATGTCACAACAATTGATCTCTCATATAACAACCTCAATGGATCTATACCCGAAAGTTTCTCAGATCTTCCTTTCCTTCAAAGATTGTCGCTCAAAAATAATTCACTGGCTGGTTCTGTCTCTGCTAAGCTTTGGAAGAATATGTCCTTCACTACAAATGCTACACTCCAAATTGATCTCCGGAACAATTTGTTCTCAAACATCTTAGGTGATCTAATCCCTCCAGCTAATGTCAGCCTAAGGCTTGCAGGCAATCCAATCTGCAAACTTTTAAGCGTAGAAAATAGTGGCCAGTTCTGTGGACCAGAGAGTGAAGAGGATGAGCTGCATGAGAACTCACTGAAATCAAATCCAATCTGTCATGTTGAATCATGTCCAGTGGATGCATTCTTTGAATATGTCGTAGCATCCCCTGCATCATGCTTTTGTGCCTTACCACTTAGAATCGGATATCGTCTCAAGAGTCCAAGTTTCTCTTATTTTCCTCCATATCAGCATTTATTTGAACAGTATGTGACTGATTTTCTCAAATTGAACCTGTATCAACTATCTATCGGTTCATATGTCTGGGAAGGGTGCCGCCTAACAATGTATTTGAAGATTTTCCCTCCATTTAATCTCGGCATCAGTGTGTTTAATAAAACTGAGGAGAAGCGAATTATAGAAATTTACACATCATGGACATTTCCGCAAACTGATCTCTTTGGACCATATGAGCTTCTCAACTATACGGTGTTGGACCCTTTTTCAAACTCAAACACTACAGTGAGTTTTGTGACACGAAAAGCAAGGATTGGAGGTGGCATCTTGGCGGCAATTATGTTAGGGGCCATTGTCTGTGTTGGTCTGATTGCTGCATTGATAATATTTGTGCGAAGAGGTAGTGTGAAAAACCAGCACAGTTTGTCTAGGAAAAGCCAATCCTCAAAGATTGGTATGAAAATCGATGGCGTGAAATCATTCACCCTGAAGGAGATGGTATTAGCTACTGGAAATTTCAAAAGCTCAAGTCAAGTTGGGCAAGGAGGTTATGGCAAGGTTTATAGAGGCATCTTATGGGACAATTCAACTGTAGCCATAAAGCGTGCTGCAGAAGGATCCTTACAAGGCACTAAAGAATTTTTTACCGAGATTGAACTTTTATCCAGGCTACATCACCGGAACTTGGTTTCGTTGATTGGATACTGTGACGAAGACGAGGAGCAGATGCTGGTTTACGAGTTCATGTCTAATGGCACTTTGAGGAGCTGGCTGTCTGGTAAAAGTGAAGAAAATCTGAGTTTTGGGATGAGATTGCAAATAGCACTGGGTTCAGCAAAAGGCATTCTTTATCTGCACAGTGAAGCGAACCCTCCGATATTCCACAGAGACATCAAAGCGACCAACATACTTCTGGACGACAGGCTCAATGCTAAAGTGGCCGATTTTGGACTGTCCCGGCTTGCCCCTGTCCTGGACGATGAAGGGTTTGTTCCTCGATATATATCTACTGTTGTCAAGGGCACACCGGGGTACCTCGACCCAGAATACTTTCTGACCCATAAGTTGACGGACAAAAGTGATGTGTACAGCCTAGGAGTTGTATTTTTAGAGATCTTGACGGGTATGCAACCCATATCACACGGCAAGAACATCGTTCGAGAGGTGAATATGGCCCATCAGATGGGGACGATGTTCTCAATAATAGACAGCAGAATGGGTTCGTTTCCATCTGAATGTGTGGAAAAGTTTGTGGCGCTGGCTCTGGCTTGTTGTCATGACAAACCAGAAGAACGGCCATGTATGCTGGATGTGGTGAGGGAGCTTGAAAACATTGCGAAGATGATGCCGGAAGACGGCAGCACCTTCTTCTCCTCAGAATGTAGTCAAAGTATTGTGTATAATACTGGGAGCAATCTGGCATCGGCATCGACATCAGCATCGGGATTGGAATCCTTGCTCAGCAAGGATCCATCGATCAGCATATCAGGAAGTGATCTTGTGAGTGGTGTAGAGCCCACAATTAACCCTCGATGA 2883 43.18 MLKQRVGADLVILLCFCFTLQSISQKTHPLEVRALLAVQRKLVDPMNHLASWNRGDPCTSNWTGVLCFSGTDNYFHIRNLHLLNMNLSGVLSPGIGQLSHLRILDFMWNDLTGTIPREIGYMTSLELLLLNGNKLSGPLPDELGYLSNLNRLQVDLNQISGPIPKSFANMTSVKHFHMNNNSLSGEVPSELSRLPSLLHLLVDNNNLSGNLPPEFSNFPELRILQLDNNNFRGEIPVTYGNFTALVKLSLRNCSLEGPIRDLSTIQNLSYLDLSWNRFSGPIPSNKLSENVTTIDLSYNNLNGSIPESFSDLPFLQRLSLKNNSLAGSVSAKLWKNMSFTTNATLQIDLRNNLFSNILGDLIPPANVSLRLAGNPICKLLSVENSGQFCGPESEEDELHENSLKSNPICHVESCPVDAFFEYVVASPASCFCALPLRIGYRLKSPSFSYFPPYQHLFEQYVTDFLKLNLYQLSIGSYVWEGCRLTMYLKIFPPFNLGISVFNKTEEKRIIEIYTSWTFPQTDLFGPYELLNYTVLDPFSNSNTTVSFVTRKARIGGGILAAIMLGAIVCVGLIAALIIFVRRGSVKNQHSLSRKSQSSKIGMKIDGVKSFTLKEMVLATGNFKSSSQVGQGGYGKVYRGILWDNSTVAIKRAAEGSLQGTKEFFTEIELLSRLHHRNLVSLIGYCDEDEEQMLVYEFMSNGTLRSWLSGKSEENLSFGMRLQIALGSAKGILYLHSEANPPIFHRDIKATNILLDDRLNAKVADFGLSRLAPVLDDEGFVPRYISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEILTGMQPISHGKNIVREVNMAHQMGTMFSIIDSRMGSFPSECVEKFVALALACCHDKPEERPCMLDVVRELENIAKMMPEDGSTFFSSECSQSIVYNTGSNLASASTSASGLESLLSKDPSISISGSDLVSGVEPTINPR 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2116669 2122248 + Conep10aG0046900.1 Cone10ag0454 446252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0454 960 Gene3D Transferase(Phosphotransferase) domain 1 698 909 - -
Cone10ag0454 960 Gene3D Ribonuclease Inhibitor 182 288 IPR032675 -
Cone10ag0454 960 FunFam Leucine-rich repeat protein kinase family protein 586 697 - -
Cone10ag0454 960 CDD STKc_IRAK 628 894 - -
Cone10ag0454 960 SUPERFAMILY L domain-like 240 380 - -
Cone10ag0454 960 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Cone10ag0454 960 Pfam Leucine Rich Repeat 173 194 IPR001611 GO:0005515(InterPro)
Cone10ag0454 960 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515(InterPro)
Cone10ag0454 960 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515(InterPro)
Cone10ag0454 960 Pfam Leucine Rich Repeat 267 284 IPR001611 GO:0005515(InterPro)
Cone10ag0454 960 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515(InterPro)
Cone10ag0454 960 SUPERFAMILY L domain-like 28 284 - -
Cone10ag0454 960 SMART serkin_6 622 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0454 960 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Cone10ag0454 960 ProSiteProfiles Protein kinase domain profile. 622 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0454 960 Pfam Protein kinase domain 623 888 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0454 960 SUPERFAMILY Protein kinase-like (PK-like) 607 907 IPR011009 -
Cone10ag0454 960 Gene3D Ribonuclease Inhibitor 289 377 IPR032675 -
Cone10ag0454 960 Gene3D Phosphorylase Kinase; domain 1 582 697 - -
Cone10ag0454 960 PANTHER RECEPTOR-LIKE PROTEIN 55 48 892 - -
Cone10ag0454 960 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524(InterPro)
Cone10ag0454 960 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 188 - -
Cone10ag0454 960 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 698 907 - -
Cone10ag0454 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0454 Cone-Chr10:2116669 Cone3ag0487 Cone-Chr3:2395717 0 dispersed
Cone10ag0450 Cone-Chr10:2090358 Cone10ag0454 Cone-Chr10:2116669 4.85E-65 proximal
Cone10ag0454 Cone-Chr10:2116669 Cone13ag1462 Cone-Chr13:10439336 1.82E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81816 PF08571 Yos1 5.50E-22 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0454 - - - 0.0