Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0470 ATGCCTTCGAAGTTGAAGAAAAGTGCGAATAAGACGCCGTCTAGACTGTCTAATTCCGATCAGTATCAATCTCCAGGGGCCCTGCCGTCGACTCCTTCTCCGGATTCAGAAGCTGGCGATGAGGATTTCTCGTTATCCCTACGAGAAGCTTCAAGTAGATTTCCTTCTCTGATTGGGGAGTCTGCTTTTGTTGGCCGTGTTGTGGACATTCAGCATGAGTCCAAAGGCTGTAAAATTTGGCTCTCAGAACCTTCCATGGTTGCTTCTTCCCTCAGTCCGGGTGCTATTGTATCGGTTTCACTTGCAGTACGGAGTAATCTTCCATATGGCTTTCCTCTTTGTCCACTACCAGGTGAATGTGACGGACTTGTTGCGATTGATGATGGGAGTAGTTTGGCTTATGAAGCAGGTGACTATTTTGCTCTCGCAACAGTTTACCCTTCTAGTAAGATTGTAAAGAATGGTGTGCGATTTTCTTCAAGCCTTTCATACACCATGGGTGGTCTTACATCAGGCAGGGTTGTGTTTGTTTATTGTATACAGAATCAATCAGTCACTAGTTTTGGAAGTGAGAGTGATAACCGTCATAGGAGTGAAGGTGGTTCTCTCTGTATATACAATTGCAAGGAATTATGTTTAGAGTTGGCTCCTTCTGCTATAAGATCATCCACAGGCAACAGTTTGTTGACGACAATGAAATCCCCCATTGAAAAGGCTCGTTGCCAGATTGAAAATGGGGGTGTTGCATCCCCCAAAACTCCTGTATATCAGTCAAGGCTTAACTCTCTTAACAGTAGAGAATCTGCCTCACCAATATATCAGGAGTCAGTGTCAAGTTCGCCCAAGCCAAACAGTTTGTCTTCTGATTCATTGGACGTTAATGAGGTATTAAGGAATGAGAATGCCAAAAAACTTCTGGAGACATGTGCCACCACCTGGCTATATTCTCGAATTTTACTGTGTGGAAATGTTGTTTCCATCCCAATGTTCTCAGAGATTTGTACTTTCCGGGTAATAGGTGCCAAAAAGTTGTCACTACATGGTATTACACATGAGTTGATGAATGAAAGAAGTAGGCATTTATTTTCTGAGGTTCCTGAGTTGCTGGACCAGTCCATCTGTGCTTTTGCTATAAACCATCAAACAAGAGTAGTTCTTCAAGTTCCATTAACTTTGGCATCAGGAAATCCCCAGGAGAGCGTGTTGTCCAGTGTAGGACATAAAATCATGGATGTGAGATCTAAAGGAGCAGGTGCAGTATCAAAATTGGGCGGTCTTTCCAAAGAGTATGCTATTCTCAAGGATATAATAGTTAGTTCATCAATTGGGGACACACTGTCAAGTTTTGGTTTACGAACTACAAAGGGAGTTCTTCTTCATGGAACGTCGGGCACAGGAAAAACTTCTCTGGCTCAACTATGTGCCCGTGATGCTGGTGTCAACTTATTCTCTGTGAATGGCCCTGAAATTATTAGTCAATATTTTGGGGAAAGTGAAAAAGCTCTACATGAAGTGTTTGATTCAGCAATTCAAGCTGCACCTGCTGTGGTTTTTATTGATGAGTTGGATTCTATTGCACCAGCAAGGAAAGATGGAGGGGAAGAGCTGTCTCACAGAATGGTTGCGACACTGTTGAATGTGATGGATGGGATTAGCAGAACTAATGGTTTACTTGTTATTGCTGCAACCAACAGGCCTGAGAGTATTGAGCCTGCACTTAGACGGCCCGGTAGACTCGACAGAGAGATTGAAATAGGTGTTCCATCTCCCCTACAACGATTGGATATACTGCTTACTCTTCTCAGTCAAATGGAGCATTCTCTTTCAAAGATTCAAGTTCAACAGCTTGCAATGTCTACACACGGTTTTGTAGGTGCTGATCTTGCCTTTCTTTGCAATGAGGCAGGCTTAGTTTGTCTTAGGCGCTTTAGCAAATCTAAGAACTCAGAAAGCAAATTGAAGTCTGAGAGAACAGATATACCTAATGAAGGTTGTTCAGATCATACAAATGGGTGGTCTTATTGTTTAAAAGACACAAGAGACACAAGAGACACAATAAAGGATTCTTCTGATTCTGAGTCTTCATGTGTTTCCAATGTGATTATTGCGGATACGCAGTCCTTTATTCCCTTGAACGGGACAGTCGCTGGAAGTTCAGATGATATTAATAACGGTGCTGAAGACAATTGTATATTAAAAGTGAGTTTTGAAGACTTTGAGAAGGCCAGAATGAAAGTGAGACCTAGTGCTATGCGGGAGGTGATTCTCGAGGTTCCAAAGGTGAAGTGGGAAGATGTTGGTGGACAAAGGGAGATTAAAGCGCAATTAATTGAAGCAGTAGAGTGGCCTCAGAAACACCAGGAAGCATTCAAACGAATTGGGACTAGGCCTCCCACAGGGATCTTGTTGTTTGGTCCTCCTGGTTGCAGCAAAACCCTGATGGCTCGTGCAGTAGCTTCGGAAGCAGGACTTAATTTCCTTGCAGTGAAAGGTCCAGAACTTTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTAAGATCCCTGTTTGCTAAGGCAAGGGCTAATGCACCATCAATTATATTTTTTGATGAAATTGATGGCCTTGCCATCACTCGTGGGAAAGAAAGTGATGGGATTTCTGTTTCGGACCGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTGCATCAGAGAGTTAATGTTACTGTTATTGCTGCCACCAACCGGCCGGATAAGATTGATCCGGCACTTCTTAGACCAGGACGCTTTGACCGGCTGTTGTATGTTGGGCCTCCTAATGAAATTGACCGAGAAGAGATATTCTGCATCCATTTGCGCAAAATTGCTTGCAACTCTGATATTAACATAAAGAAGTTGGCTTCTCTCACTAGAAGCTGCACTGGGGCTGATATCTCATTAATTTGCCGGGAAGCTGCTTTGGCTGCTCTAGAGGAGAGCCTTTCTGCATCAGAAATTACAATGCAACATTTGAAAACTGCAATCAAACAGGTAGTACCATCAGAAGTTCAGCCATATCACGAGCTATCAAAAAAATTTGAAAGGATTGTTTACACCAGTCGAGAAGGCGAAGTAGGCTACCAACAGTGCTCACGTCAATCTAATGACTTTTCCCTCTGGAGCCCTTTAAAATTCGTGGGATTGTTCCTTCATCGTATCTGGACCATCATATCACTCTCAAAATCTGTCTCAGATGGTTAG 3225 43.01 MPSKLKKSANKTPSRLSNSDQYQSPGALPSTPSPDSEAGDEDFSLSLREASSRFPSLIGESAFVGRVVDIQHESKGCKIWLSEPSMVASSLSPGAIVSVSLAVRSNLPYGFPLCPLPGECDGLVAIDDGSSLAYEAGDYFALATVYPSSKIVKNGVRFSSSLSYTMGGLTSGRVVFVYCIQNQSVTSFGSESDNRHRSEGGSLCIYNCKELCLELAPSAIRSSTGNSLLTTMKSPIEKARCQIENGGVASPKTPVYQSRLNSLNSRESASPIYQESVSSSPKPNSLSSDSLDVNEVLRNENAKKLLETCATTWLYSRILLCGNVVSIPMFSEICTFRVIGAKKLSLHGITHELMNERSRHLFSEVPELLDQSICAFAINHQTRVVLQVPLTLASGNPQESVLSSVGHKIMDVRSKGAGAVSKLGGLSKEYAILKDIIVSSSIGDTLSSFGLRTTKGVLLHGTSGTGKTSLAQLCARDAGVNLFSVNGPEIISQYFGESEKALHEVFDSAIQAAPAVVFIDELDSIAPARKDGGEELSHRMVATLLNVMDGISRTNGLLVIAATNRPESIEPALRRPGRLDREIEIGVPSPLQRLDILLTLLSQMEHSLSKIQVQQLAMSTHGFVGADLAFLCNEAGLVCLRRFSKSKNSESKLKSERTDIPNEGCSDHTNGWSYCLKDTRDTRDTIKDSSDSESSCVSNVIIADTQSFIPLNGTVAGSSDDINNGAEDNCILKVSFEDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREIKAQLIEAVEWPQKHQEAFKRIGTRPPTGILLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAITRGKESDGISVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEIDREEIFCIHLRKIACNSDINIKKLASLTRSCTGADISLICREAALAALEESLSASEITMQHLKTAIKQVVPSEVQPYHELSKKFERIVYTSREGEVGYQQCSRQSNDFSLWSPLKFVGLFLHRIWTIISLSKSVSDG 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2178924 2185235 + Conep10aG0048600.1 Cone10ag0470 446268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0470 1074 MobiDBLite consensus disorder prediction 1 31 - -
Cone10ag0470 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 1012 IPR027417 -
Cone10ag0470 1074 Pfam ATPase family associated with various cellular activities (AAA) 801 932 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone10ag0470 1074 Pfam ATPase family associated with various cellular activities (AAA) 457 586 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone10ag0470 1074 Gene3D - 588 761 - -
Cone10ag0470 1074 Coils Coil 982 1002 - -
Cone10ag0470 1074 Gene3D - 762 1009 IPR027417 -
Cone10ag0470 1074 CDD RecA-like_CDC48_r2-like 772 931 - -
Cone10ag0470 1074 ProSitePatterns AAA-protein family signature. 903 921 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone10ag0470 1074 FunFam calmodulin-interacting protein 111 isoform X1 758 933 - -
Cone10ag0470 1074 MobiDBLite consensus disorder prediction 1 42 - -
Cone10ag0470 1074 Pfam AAA+ lid domain 955 1000 IPR041569 -
Cone10ag0470 1074 Pfam AAA+ lid domain 612 651 IPR041569 -
Cone10ag0470 1074 FunFam spermatogenesis-associated protein 5-like protein 1 934 1017 - -
Cone10ag0470 1074 SMART AAA_5 797 935 IPR003593 GO:0016887(InterPro)
Cone10ag0470 1074 SMART AAA_5 453 589 IPR003593 GO:0016887(InterPro)
Cone10ag0470 1074 PANTHER AAA-FAMILY ATPASE 580 1017 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Cone10ag0470 1074 Gene3D - 934 1004 - -
Cone10ag0470 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 642 IPR027417 -
Cone10ag0470 1074 Gene3D - 404 586 IPR027417 -
Cone10ag0470 1074 FunFam Putative vesicular transport protein (CDC48) 408 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0470 Cone-Chr10:2178924 Cone13ag0155 Cone-Chr13:969837 7.82E-123 dispersed
Cone6ag1646 Cone-Chr6:12594295 Cone10ag0470 Cone-Chr10:2178924 3.37E-08 dispersed
Cone10ag0470 Cone-Chr10:2178924 Cone19ag1243 Cone-Chr19:8555047 2.89E-122 transposed
Cone10ag0470 Cone-Chr10:2178924 Cone10ag0232 Cone-Chr10:1132138 2.35E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0470 - - - 0.0