Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0471 ATGAGGGAAGACGAGTCGAATTGGTTTTCAAAGTGGGAAGAAGAACTTCCTTCGCCTGAAGAACTCATGCCCATCTCTCAAACCCTGATCACACCTGATCTCGCTCTAGCTTTCGATATTCGGAATCCGAACAACTCCTCTAGCCCGCAGCACACTCCTCCTCCTCCGCCTCTTCTCCCTCCTTCTAACAGCCCTCTGCCCCCTTCACCCGCCGCCGCCTGTGGTGGCCTGGGTACCGGTCTCTCTTCCGCTGCTGCCGTCGCCACTCCAACCCAACCTAACTCCTCTGACTTCTGCGATTCTGCCGATTTGGGATCAGGCGCAGCAGGCGACGAGCCTGCTCGCACCTTAAAACGGCCCCGCCTTGTGTGGACCCCACAGCTGCACAAACGGTTTGTTGACGCCGTGGCCCACTTAGGGATCAAGAACGCTGTACCTAAGACGATAATGCAGCTCATGAGCGTAGATGGATTGACTAGGGAAAACGTAGCAAGTCATTTGCAAAAGTACAGACTTTACCTCAAGCGTATGCAAGGATTGTCATCCAGTGGAGGTGGCGGGGGAGCAGGCGGTGGTGCTGGTGGTTTAGTTTCTGGGTCCGATCCCGCAACCGACCATCTTTTTGCCAGCTCACCCGTCCCACCACATTTCTTACACCCCACCAGACCTAATTCGGACCATTACTTGCCCTTTGTTCCGGTAGCTGCTCTGCAGCAGCACCATCACCACCAGCAGATGGCGGCAGCCGTGGCAGGCCACCACCACCCTCAGATTCAGCCTCAGTATCATCCCCAGCATCATAATAGGCAAGTGGGTCATTTTGGGTCGCCCCCAAATGGTCAATTTGAGCATCCATTTTTGGCTAGGCAGTCACAGCAAGTTCATAGAATGGGGGGCCCACCTATGCATAACTCTGTTCCCAGTTATGTAGAGGATTTGGAATCGGCAAATGCTTCCGGAGGGAGAAGAGTTCTTACCTTGTTTCCAACTGGAGATGACTGA 1002 54.19 MREDESNWFSKWEEELPSPEELMPISQTLITPDLALAFDIRNPNNSSSPQHTPPPPPLLPPSNSPLPPSPAAACGGLGTGLSSAAAVATPTQPNSSDFCDSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSSGGGGGAGGGAGGLVSGSDPATDHLFASSPVPPHFLHPTRPNSDHYLPFVPVAALQQHHHHQQMAAAVAGHHHPQIQPQYHPQHHNRQVGHFGSPPNGQFEHPFLARQSQQVHRMGGPPMHNSVPSYVEDLESANASGGRRVLTLFPTGDD 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2186437 2188555 + Conep10aG0048700.1 Cone10ag0471 446269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0471 333 MobiDBLite consensus disorder prediction 36 75 - -
Cone10ag0471 333 MobiDBLite consensus disorder prediction 87 113 - -
Cone10ag0471 333 FunFam Two-component response regulator 115 178 - -
Cone10ag0471 333 MobiDBLite consensus disorder prediction 87 101 - -
Cone10ag0471 333 Gene3D - 116 178 - -
Cone10ag0471 333 MobiDBLite consensus disorder prediction 48 68 - -
Cone10ag0471 333 SUPERFAMILY Homeodomain-like 116 176 IPR009057 -
Cone10ag0471 333 MobiDBLite consensus disorder prediction 250 281 - -
Cone10ag0471 333 MobiDBLite consensus disorder prediction 1 22 - -
Cone10ag0471 333 MobiDBLite consensus disorder prediction 1 18 - -
Cone10ag0471 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677(InterPro)
Cone10ag0471 333 Pfam Myb-like DNA-binding domain 122 171 IPR001005 -
Cone10ag0471 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 175 IPR017930 -
Cone10ag0471 333 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 295 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0471 Cone-Chr10:2186437 Cone5ag1126 Cone-Chr5:5011016 7.53E-42 dispersed
Cone10ag0471 Cone-Chr10:2186437 Cone3ag0500 Cone-Chr3:2465908 1.78E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44187 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0471 - - - 0.0