Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0494 ATGGGTTTCTTAGAGATGGTCGATCCTCAGATTCTTCTGGGCTTAGCTGTCGCTGTTGTTGCCATTGGTGTCGCTGCTGCTTTTCTCTTCTCTTCTTCTAACAAGTCCAAGACTAGAGGCTGCTTAGATCCAGAGAATTACAAGGAGTTTAAACTTGTCAAGCGCGTGCAGTTGAGCCATAATGTAGCCAAGTTCACTTTTACACTTCCAACACCCACTTCCGTTCTTGGTCTTCCCATTGGACAGCATATGAGTTGCAGGGGTAAGGATAGTTTAGGAGAAGAGGTTATTAAACCATATACTCCTACGACTTTGGACTCTGATATAGGGATTTTTGAATTAGTCATAAAGATGTATCCTCAAGGAAGGATGTCACATCATTTTAGAGAGTTGCATGTTGGGGATTATCTTGCTGTGAAGGGGCCTAAGGGGCGTTTCAAGTATCAAATTGGTCAAGTTAGGGCATTTGGGATGCTTGCTGGAGGCTCTGGGATTACTCCTATGTTTCAAGTTGCTCGAGCCATATTGGAAAACCCAATCGACAAAACAAAGGTGCACCTTATTTATGCTAATGTTGCCTATGAAGACATCCTCTTAAAGGAGGAGTTAGACTCTCTCGCCACGAAATATGCAGATCGCTTCAAGATCTACTATGTCTTGAACAATCCTCCGGAAGGTTGGGATGGTGGTGTCGGTTTTGTATCTGCAGAAATGATTAAAACCCACTGCCCTGCCCCGGCTTCTGATATTCAGATTCTAAGGTGTGGCCCCCCACCTATGAACAAGGCCATGGCTGCTCATCTTGAGGGTCTAGGATACACACCCGAGATGCAGTTCCAGTTCTGA 846 44.92 MGFLEMVDPQILLGLAVAVVAIGVAAAFLFSSSNKSKTRGCLDPENYKEFKLVKRVQLSHNVAKFTFTLPTPTSVLGLPIGQHMSCRGKDSLGEEVIKPYTPTTLDSDIGIFELVIKMYPQGRMSHHFRELHVGDYLAVKGPKGRFKYQIGQVRAFGMLAGGSGITPMFQVARAILENPIDKTKVHLIYANVAYEDILLKEELDSLATKYADRFKIYYVLNNPPEGWDGGVGFVSAEMIKTHCPAPASDIQILRCGPPPMNKAMAAHLEGLGYTPEMQFQF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2284887 2287901 + Conep10aG0051000.1 Cone10ag0494 446292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0494 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cone10ag0494 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cone10ag0494 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cone10ag0494 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cone10ag0494 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cone10ag0494 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cone10ag0494 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cone10ag0494 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Cone10ag0494 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cone10ag0494 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 277 IPR039261 -
Cone10ag0494 281 Gene3D Translation factors 40 139 - -
Cone10ag0494 281 Gene3D - 140 281 IPR039261 -
Cone10ag0494 281 SUPERFAMILY Riboflavin synthase domain-like 42 148 IPR017938 -
Cone10ag0494 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Cone10ag0494 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Cone10ag0494 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Cone10ag0494 281 CDD cyt_b5_reduct_like 50 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0494 K00326 - - csv:101212569 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0494 Cone-Chr10:2284887 Cone5ag1478 Cone-Chr5:9871340 7.64E-157 dispersed
Cone10ag0494 Cone-Chr10:2284887 Cone3ag0519 Cone-Chr3:2561974 9.84E-195 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g375 . . . . . . . . . . Cma03g00300 Cma07g01228 . Car07g01183 . Cpe10g00995 . Bhi03g02212 . . . . . . Cla04g00654 . . . . . . Cone3ag0471 Cone10ag0494 . Cone19ag1441 Lsi01g01606 . Chy08g00585 . . . . . . Bpe02g00928 . . . Cmo03g00313 Cmo07g01270 . . . . . Cpe19g00148 . . . . . . . . . . . . . . . . . Cme08g01483
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86