Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag0529 | ATGACGAGGCTATTGCAGGGTTCTCATGAGATCCAAAGGGGTCAAAATTCTAGAGGAGGAGACATTGAGTTAGGGACGAATGCCGCCATGAATTCTGGAGAACTTGGTTTGGACAGTTTTTTGAAACAGGTCGAACAGATTGACAAAGAAAATGAGAAACTGGAGAAACTACTCCTAAAACTCGAGGACGCGCATGAGGAATCCATTGGTGTGACTAAGGCTCCTCATATGAAAGCAATCAAGCAGCGAATGGAAAAAGTTGTTGATGAAGTAGGAAAAGTTGCTCGTTTTTTGAAGTCAAAGATTGAAGAACTTGATAGCGAGAATTTAGCAAACAGACAGAAGCCAGGGTGCGGAAAAGGAACGTGTTTAGATCGATCCAGAACGGCAACTACTCTTGCATTGAAAAAGAAGTTTATGGACAAGATGACTCAATTCCAGACTCTAAGGCAAGCCATCCATCAAGAGTATCGGGAAGTTGTTGAGCGGCATGTCTTTACGGTTACGGGTGAAAGAGCTGATGAAGAGACAATTGACAAGTTGATTGAGACTGGAGAGTGTGAACAAATTTATCAAAAGGCAATACAGGAACAAGGGCGAGGGCAGATGATGGACACGCTTGCAGAAATTCATGAACGTCACGGTGCAGTCGTAGAACTGGAGAGAAAGCTACTTGAACTACAACAGGTATTTCTTGATTTGGCAGTCTTGGTGGATTCACAAGGGGATATGCTCGACAATATAGAATCACATGTTTCAGGTGCAGTGGATCATGTGCAACAAGGAAACAATGCTCTCCAAAAGGCCAAGAAACTACAAAAGGGTACAAGGAAATGGATGTGCATTGGCATTCTCGTTCTTCTTGCTGCCGCTGCAATCATAGTTCTAGGCGTTCTTAAGCCATGGCGTAGTCGTGCTCCTCACGAACCTCATGGGCCTCATGGTGATGAAATCCCTCCCCAATTTCATGGATAG | 975 | 44.1 | MTRLLQGSHEIQRGQNSRGGDIELGTNAAMNSGELGLDSFLKQVEQIDKENEKLEKLLLKLEDAHEESIGVTKAPHMKAIKQRMEKVVDEVGKVARFLKSKIEELDSENLANRQKPGCGKGTCLDRSRTATTLALKKKFMDKMTQFQTLRQAIHQEYREVVERHVFTVTGERADEETIDKLIETGECEQIYQKAIQEQGRGQMMDTLAEIHERHGAVVELERKLLELQQVFLDLAVLVDSQGDMLDNIESHVSGAVDHVQQGNNALQKAKKLQKGTRKWMCIGILVLLAAAAIIVLGVLKPWRSRAPHEPHGPHGDEIPPQFHG | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2441741 | 2444502 | + | Conep10aG0054600.1 | Cone10ag0529 | 446327 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag0529 | 324 | CDD | SNARE_syntaxin1-like | 206 | 268 | - | - | |
Cone10ag0529 | 324 | Gene3D | - | 197 | 300 | - | - | |
Cone10ag0529 | 324 | SUPERFAMILY | t-snare proteins | 36 | 262 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cone10ag0529 | 324 | Pfam | Syntaxin | 39 | 242 | IPR006011 | GO:0016020(InterPro) | |
Cone10ag0529 | 324 | CDD | SynN | 37 | 194 | IPR006011 | GO:0016020(InterPro) | |
Cone10ag0529 | 324 | FunFam | Syntaxin 132 | 200 | 300 | - | - | |
Cone10ag0529 | 324 | Pfam | SNARE domain | 243 | 295 | IPR000727 | - | |
Cone10ag0529 | 324 | PANTHER | SYNTAXIN | 39 | 285 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cone10ag0529 | 324 | Gene3D | - | 34 | 161 | - | - | |
Cone10ag0529 | 324 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cone10ag0529 | 324 | Coils | Coil | 37 | 67 | - | - | |
Cone10ag0529 | 324 | ProSitePatterns | Syntaxin / epimorphin family signature. | 213 | 252 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cone10ag0529 | 324 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cone10ag0529 | 324 | SMART | SynN_4 | 32 | 158 | IPR006011 | GO:0016020(InterPro) | |
Cone10ag0529 | 324 | SMART | tSNARE_6 | 202 | 269 | IPR000727 | - | |
Cone10ag0529 | 324 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 207 | 269 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0529 | Cone-Chr10:2441741 | Cone13ag0457 | Cone-Chr13:4925873 | 1.93E-156 | dispersed | |
Cone10ag0529 | Cone-Chr10:2441741 | Cone13ag0475 | Cone-Chr13:5185404 | 3.44E-75 | wgd | |
Cone10ag0529 | Cone-Chr10:2441741 | Cone3ag0557 | Cone-Chr3:2748964 | 1.96E-192 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag0529 | K08486 | - | mdm:103413446 | 429.869 |