Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0529 ATGACGAGGCTATTGCAGGGTTCTCATGAGATCCAAAGGGGTCAAAATTCTAGAGGAGGAGACATTGAGTTAGGGACGAATGCCGCCATGAATTCTGGAGAACTTGGTTTGGACAGTTTTTTGAAACAGGTCGAACAGATTGACAAAGAAAATGAGAAACTGGAGAAACTACTCCTAAAACTCGAGGACGCGCATGAGGAATCCATTGGTGTGACTAAGGCTCCTCATATGAAAGCAATCAAGCAGCGAATGGAAAAAGTTGTTGATGAAGTAGGAAAAGTTGCTCGTTTTTTGAAGTCAAAGATTGAAGAACTTGATAGCGAGAATTTAGCAAACAGACAGAAGCCAGGGTGCGGAAAAGGAACGTGTTTAGATCGATCCAGAACGGCAACTACTCTTGCATTGAAAAAGAAGTTTATGGACAAGATGACTCAATTCCAGACTCTAAGGCAAGCCATCCATCAAGAGTATCGGGAAGTTGTTGAGCGGCATGTCTTTACGGTTACGGGTGAAAGAGCTGATGAAGAGACAATTGACAAGTTGATTGAGACTGGAGAGTGTGAACAAATTTATCAAAAGGCAATACAGGAACAAGGGCGAGGGCAGATGATGGACACGCTTGCAGAAATTCATGAACGTCACGGTGCAGTCGTAGAACTGGAGAGAAAGCTACTTGAACTACAACAGGTATTTCTTGATTTGGCAGTCTTGGTGGATTCACAAGGGGATATGCTCGACAATATAGAATCACATGTTTCAGGTGCAGTGGATCATGTGCAACAAGGAAACAATGCTCTCCAAAAGGCCAAGAAACTACAAAAGGGTACAAGGAAATGGATGTGCATTGGCATTCTCGTTCTTCTTGCTGCCGCTGCAATCATAGTTCTAGGCGTTCTTAAGCCATGGCGTAGTCGTGCTCCTCACGAACCTCATGGGCCTCATGGTGATGAAATCCCTCCCCAATTTCATGGATAG 975 44.1 MTRLLQGSHEIQRGQNSRGGDIELGTNAAMNSGELGLDSFLKQVEQIDKENEKLEKLLLKLEDAHEESIGVTKAPHMKAIKQRMEKVVDEVGKVARFLKSKIEELDSENLANRQKPGCGKGTCLDRSRTATTLALKKKFMDKMTQFQTLRQAIHQEYREVVERHVFTVTGERADEETIDKLIETGECEQIYQKAIQEQGRGQMMDTLAEIHERHGAVVELERKLLELQQVFLDLAVLVDSQGDMLDNIESHVSGAVDHVQQGNNALQKAKKLQKGTRKWMCIGILVLLAAAAIIVLGVLKPWRSRAPHEPHGPHGDEIPPQFHG 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2441741 2444502 + Conep10aG0054600.1 Cone10ag0529 446327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0529 324 CDD SNARE_syntaxin1-like 206 268 - -
Cone10ag0529 324 Gene3D - 197 300 - -
Cone10ag0529 324 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone10ag0529 324 Pfam Syntaxin 39 242 IPR006011 GO:0016020(InterPro)
Cone10ag0529 324 CDD SynN 37 194 IPR006011 GO:0016020(InterPro)
Cone10ag0529 324 FunFam Syntaxin 132 200 300 - -
Cone10ag0529 324 Pfam SNARE domain 243 295 IPR000727 -
Cone10ag0529 324 PANTHER SYNTAXIN 39 285 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone10ag0529 324 Gene3D - 34 161 - -
Cone10ag0529 324 MobiDBLite consensus disorder prediction 1 22 - -
Cone10ag0529 324 Coils Coil 37 67 - -
Cone10ag0529 324 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone10ag0529 324 MobiDBLite consensus disorder prediction 1 23 - -
Cone10ag0529 324 SMART SynN_4 32 158 IPR006011 GO:0016020(InterPro)
Cone10ag0529 324 SMART tSNARE_6 202 269 IPR000727 -
Cone10ag0529 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0529 Cone-Chr10:2441741 Cone13ag0457 Cone-Chr13:4925873 1.93E-156 dispersed
Cone10ag0529 Cone-Chr10:2441741 Cone13ag0475 Cone-Chr13:5185404 3.44E-75 wgd
Cone10ag0529 Cone-Chr10:2441741 Cone3ag0557 Cone-Chr3:2748964 1.96E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0529 K08486 - mdm:103413446 429.869