Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0539 ATGAAGAACTCTCTACTTTTCTTCTTCTCCTCTGTTTTTCTGGTTTCAATATCAAACACAGTTTTCTCCTCTGTTTCTGCTTCTGAGGAAGAAGCTAATGCTCTCCTTAAATGGAAAGCCACCTTTCAAAATCAAACCCAGTCCGAATTATCTTCCTGGATTTCATTACGCGAAAACAGCACCCAAAGCTTAAGTCCGTGCATTTGGTATGGAGTTAATTGCAACTCTGAGGAAAGTATCATCAGAATCAACCTGACTACCTCTGGTTTACAAGGAACGCTTGATGAATTTTCCTTCTCATCCTTCCCTAATCTTGCATACTTCGAGCTTAGCGGGAATAGCTTCTTCGGAACAATCCCACCTTTGATCAGCAACCTCTCCAAATTAATATATCTCGATTTCTCCGACAATCAATTTTCCGGGAAAATCCCACCTGAAATCGGGCTGTTAAGAAATCTTCAATTCCTCCATCTTCCTGAGAATCAGTTGAATGATTCATTGCCTCAAGAAATAGGCCAGCTAATCTCTCTCACGGAGTTAGATATTTCCACCAACAATCTTCAGGTTCCAATTCCATCTTCTATAGGAAACTTGAGCAACATGGAAAATTTATTTCTCAATGACAATTCATTTTCCGGGTTCATTCCAGAAGAAATGGGAAATCTTTCAAACTTGGTTGCGCTTTATATGAATGGGAACCGGTTGAGGGGTCCAATCCCTAAATCGTTCAAAAATCTAAAGAAACTAAATGTGTTGTATATGTTTCACAACGAACTTTCTGAGCCTATTCCTGAAGAGCTCGGAAATTTGGAAAATCTCATCCAGTTAAGCTTACACACAAATCATCTTTCTGGGTCAATCCCAGCTTCATTGGGTAATCATAGAAACCTTACCCTTCTTCATCTATACATGAATCAACTCACCGGGCCCATCCCAAAAGAGCTTGGAAACTTGACATTGATGGAAGACTTACAGCTCAGTCAGAATTATCTCAATGGCTCTATTCCAGTTTCATTAGCTCAACTAATCAATTTGAAGAGCCTGTATCTTCGTGACAATGAACTGTCCGGTTTAATTCCAAAAGAATTCGAAAATTCGACCCAGTTGGAAATGTTGCAACTGGACACTAATGGATTCACTGGAAATGTGCCAGATAGCTTCTGTTCAGGAGGAAAACTTCAGAATTTCACTCTTAATGACAACTACCTCACTGGTCCGATTCCAAAAAGCTTAACAGATTGCTCGAGCCTGGTCCGGTTTCGCCTAAATAATAATCAGTTCGGTGGAAATATTTCTGAAGATTTTGGTGTCTATCCTGATCTTGACTTCATTGATCTAAGCAATAACAACTTTTATGGCGAAATCTCTCCTAAATGGGGACAATGTTCTCGATTAGGATCCCTCCGTCTTGGCCGAAACAACATTTCCGGTCAGTTACCTCCTGAGATTGCAAACTCTACTCAACTCCATGTACTTGATTTATCTTTCAATCAATTAGAAGGAACAATCCCTAGGGAAATTGGAAGTTTAGCTTTGGTGAAGTTGATATTGAATGACAATCACTTTTCTGGTGGTATCCCTTCAGAGCTCGGATCATTAACAGATCTTGAATATCTTGACATTTCATCAAACAGACTGAGTGCGTCAATTCCGAGCTTTCTTGGCGAATTCTGGAAGATATATTACTTGAATTTGAGTAACAACAAGTTAACTCGAGCAATTCCAGCTCAATTAGGGATTCTATTTCATCTTTCTATGCTCGATTTAAGTTACAACTCACTCACTGGACCGATACCATCGGAAATCGGAAGATTGCAGAGTTTAGAGATGCTTAATATCTCTCACAACAATCTTTCAGGTTCGATTCCGAAAACTTTTGAAGAAATGTCTGGATTGCTCTTCATCGATATATCTCACAATCAGTTACAAGGTCCTCTTCCAAACACGACTGCATTTCAGAAAGCTCCAATCCAAGCCCTTGAAGGCAACGCTGGCTTATGCGGCAGGGTAGAACTTAAAGCTTGTAATTCTTCAACTTCTTTGAAAGATAAATCAAGTGTGAACCATAAACTTGTGTTTGTAATTGTTTTCCCTCTCCTGGGAGCAGTTCTTCTACTGGCAGTTGCCTTCTCTGCAATTCTGATAGCGATGAATAAGAGAAAGAAAGAACCAGAAACGGAACAAGGAGGCTACCAAAACGCAGAGCTCTTCTCGGTGTTGAAATTCGATGGAAGAGCAGTGTACGAAGAAATCATCAAAGCAACTGCAAATTTCGATCCAAAGTTTCAGATCGGAAGAGGAGGGACTGGTACCGTCTACAAAGCAAAGCTAACATCTGGTCACGTAGTAGCGGTGAAGAAACTACACGTCCTACAAGAAGATACAATCCCAAAGGAGCTTGAAGACGAGGTTACAGCATTAACAGAGATACGACATCGCAACATCGTGAAGTTTTACGGGTTTTGTTCGCATTCCCAGAACATGTTCTTAGTTTATGAGTATCTTAAAAGAGGGAGCTTGGGTTGCCTACTGAGCAGAGATAACGATGCCCTGCAACTAGATTGGTCGAAGAGGATGCAGATTTTGAAAGGGGTGGCTTCTGCTCTGTCGTACATGCATCATCACTGCATTCCTCCAATTGTTCATCGAGACATTAAAAGCACTAACATCTTGCTTCATGCTGACTATGAAGCCTGTGTCTCCGACTTCGGCTCTGCTAAACTTCTCGACCCAGATTCTTCTAACTGGACGGCAATGGTGGGAACATTTGGATATACAGCACCAGAACTTGCGTATAAGATGAAGGTGACGGAAAAATGCGATGTTTATAGCTTTGGAGTGTTGACTCTAGAAGTAATAAGAGGAAAGCATCCCGGTGGGTCAATCTCCACACTAGTTTCTACGTCAGACGTAGAGAACAACACAACACTGAATGGTTTGTTAGATCAACGGCTTCCCCCTCCAGTTCCTCACGTCGAGGAGGAATTGATCGATGTTTTGAAGATTGCAAGGACATGCTTATGCGAGAATCCGGATTCCAGACCCACCATGCATACGGTTTTTCAGTCTCTATCGAAGCTTATTATATAG 3090 41.13 MKNSLLFFFSSVFLVSISNTVFSSVSASEEEANALLKWKATFQNQTQSELSSWISLRENSTQSLSPCIWYGVNCNSEESIIRINLTTSGLQGTLDEFSFSSFPNLAYFELSGNSFFGTIPPLISNLSKLIYLDFSDNQFSGKIPPEIGLLRNLQFLHLPENQLNDSLPQEIGQLISLTELDISTNNLQVPIPSSIGNLSNMENLFLNDNSFSGFIPEEMGNLSNLVALYMNGNRLRGPIPKSFKNLKKLNVLYMFHNELSEPIPEELGNLENLIQLSLHTNHLSGSIPASLGNHRNLTLLHLYMNQLTGPIPKELGNLTLMEDLQLSQNYLNGSIPVSLAQLINLKSLYLRDNELSGLIPKEFENSTQLEMLQLDTNGFTGNVPDSFCSGGKLQNFTLNDNYLTGPIPKSLTDCSSLVRFRLNNNQFGGNISEDFGVYPDLDFIDLSNNNFYGEISPKWGQCSRLGSLRLGRNNISGQLPPEIANSTQLHVLDLSFNQLEGTIPREIGSLALVKLILNDNHFSGGIPSELGSLTDLEYLDISSNRLSASIPSFLGEFWKIYYLNLSNNKLTRAIPAQLGILFHLSMLDLSYNSLTGPIPSEIGRLQSLEMLNISHNNLSGSIPKTFEEMSGLLFIDISHNQLQGPLPNTTAFQKAPIQALEGNAGLCGRVELKACNSSTSLKDKSSVNHKLVFVIVFPLLGAVLLLAVAFSAILIAMNKRKKEPETEQGGYQNAELFSVLKFDGRAVYEEIIKATANFDPKFQIGRGGTGTVYKAKLTSGHVVAVKKLHVLQEDTIPKELEDEVTALTEIRHRNIVKFYGFCSHSQNMFLVYEYLKRGSLGCLLSRDNDALQLDWSKRMQILKGVASALSYMHHHCIPPIVHRDIKSTNILLHADYEACVSDFGSAKLLDPDSSNWTAMVGTFGYTAPELAYKMKVTEKCDVYSFGVLTLEVIRGKHPGGSISTLVSTSDVENNTTLNGLLDQRLPPPVPHVEEELIDVLKIARTCLCENPDSRPTMHTVFQSLSKLII 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2517054 2520691 - Conep10aG0055600.1 Cone10ag0539 446337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0539 1029 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524(InterPro)
Cone10ag0539 1029 Gene3D Ribonuclease Inhibitor 192 287 IPR032675 -
Cone10ag0539 1029 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Cone10ag0539 1029 Pfam Leucine rich repeat 176 235 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 Pfam Leucine rich repeat 324 378 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 Pfam Leucine rich repeat 583 642 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 FunFam Leucine-rich repeat receptor protein kinase MSP1 719 834 - -
Cone10ag0539 1029 Gene3D Ribonuclease Inhibitor 387 679 IPR032675 -
Cone10ag0539 1029 Gene3D Phosphorylase Kinase; domain 1 717 834 - -
Cone10ag0539 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0539 1029 FunFam MDIS1-interacting receptor like kinase 2 835 1028 - -
Cone10ag0539 1029 PRINTS Leucine-rich repeat signature 605 618 - -
Cone10ag0539 1029 PRINTS Leucine-rich repeat signature 584 597 - -
Cone10ag0539 1029 SUPERFAMILY L domain-like 56 384 - -
Cone10ag0539 1029 Gene3D Transferase(Phosphotransferase) domain 1 835 1028 - -
Cone10ag0539 1029 FunFam Leucine-rich repeat receptor protein kinase EMS1 263 362 - -
Cone10ag0539 1029 FunFam Nuclear pore complex protein NUP107 28 193 - -
Cone10ag0539 1029 Pfam Protein kinase domain 763 1022 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0539 1029 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 262 1025 - -
Cone10ag0539 1029 Pfam Leucine Rich Repeat 512 533 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 Pfam Leucine Rich Repeat 128 148 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 Pfam Leucine Rich Repeat 248 270 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 Pfam Leucine Rich Repeat 296 318 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 Pfam Leucine Rich Repeat 489 510 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 Pfam Leucine Rich Repeat 536 555 IPR001611 GO:0005515(InterPro)
Cone10ag0539 1029 SMART LRR_typ_2 222 245 IPR003591 -
Cone10ag0539 1029 SMART LRR_typ_2 487 510 IPR003591 -
Cone10ag0539 1029 SMART LRR_typ_2 342 365 IPR003591 -
Cone10ag0539 1029 SMART LRR_typ_2 150 174 IPR003591 -
Cone10ag0539 1029 SMART LRR_typ_2 533 557 IPR003591 -
Cone10ag0539 1029 SMART LRR_typ_2 270 294 IPR003591 -
Cone10ag0539 1029 SMART LRR_typ_2 605 628 IPR003591 -
Cone10ag0539 1029 ProSiteProfiles Protein kinase domain profile. 758 1028 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0539 1029 SMART LRR_sd22_2 174 200 - -
Cone10ag0539 1029 SMART LRR_sd22_2 486 521 - -
Cone10ag0539 1029 SMART LRR_sd22_2 605 631 - -
Cone10ag0539 1029 SMART LRR_sd22_2 533 555 - -
Cone10ag0539 1029 SMART LRR_sd22_2 222 248 - -
Cone10ag0539 1029 SMART LRR_sd22_2 342 363 - -
Cone10ag0539 1029 Gene3D Ribonuclease Inhibitor 288 386 IPR032675 -
Cone10ag0539 1029 SMART serkin_6 758 1028 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0539 1029 Pfam Leucine rich repeat N-terminal domain 29 75 IPR013210 -
Cone10ag0539 1029 SUPERFAMILY Protein kinase-like (PK-like) 743 1024 IPR011009 -
Cone10ag0539 1029 SUPERFAMILY L domain-like 414 668 - -
Cone10ag0539 1029 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 366 679 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0539 Cone-Chr10:2517054 Cone17ag1225 Cone-Chr17:8872833 9.34E-224 dispersed
Cone10ag0539 Cone-Chr10:2517054 Cone20ag0500 Cone-Chr20:2712519 8.77E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81818 PF04525 LOR 4.30E-54 CL0395 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0539 - - - 0.0