Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0552 ATGAACGACCTAATGACCAAATCCTTCACTAACTACGTTGATCTAAAGAAGGCAGCCATGAAAGACCTAGATCTCGAATCAGGCAACCTAGAGATGATGTCATCAGCAGCAATCCACATGGACAATGATCTCAACCAATTCCTAGCAGAAGCCGAGAAGGTCAAAACAGAAATGGACTGCATCAAATCCATCCTCCTCAATCTCCAACAAGCAAACGAAGAGAGCAAATCCCTACACAAACCCGAACCCCTAAAAGCCCTGCGGGAAAAAATCAATTCCGACATCCTCACCGTCCTGAAAAACGCGCGGGCCATCCAAACCCATCTCGAAGAGATGGACCGTGCCAATGCGAGCTACAAACGACTCTCTGGACAGAAACCAAACGACAACAGCTTCACGCCGATTTACCGGGCCCGGATCGGGGTCACAAACGGGCTGAGAAAGCGACTCAAGGAGCTCATGATGGAATTTCAAGCTCTCCGACAGAAAATGATGACAGAGTATAAGGAAACGGTTGGGAGGAGATACTTTACTGTGACGGGGGAGTATCCGGGCGAGGAGGTGATAGAGAAGATCATATCGGATGGAGGGGAGGAGTATATGGGCCGAGCCATCGAATTGCATGGGAGGGGGATGGTGGTTGAGATGGTTGTGGAGATTAAGGATAGGTACGACGGGGCGAAGGAAGTGGAGAAGAGTCTGTTGGAACTGCATAGGTTGTTCATGGACATGGCGGTTATGGTGGAGGTGCAAGGGGAAAAGATGGATGATATCGAACACCACGTTTTGAGTGCTGGGCAGTATGTTAGTGATGGGACCAAGAGTTTGAAGACTGCTAAGGAGTATCAGAGAAGTAGTAGGAAGTGTATGTTTTTGGGATTGATTCTACTACTTGTGATTGTTCTTGCTATTGTCATAGGTATGACCACTTCTTGA 936 47.97 MNDLMTKSFTNYVDLKKAAMKDLDLESGNLEMMSSAAIHMDNDLNQFLAEAEKVKTEMDCIKSILLNLQQANEESKSLHKPEPLKALREKINSDILTVLKNARAIQTHLEEMDRANASYKRLSGQKPNDNSFTPIYRARIGVTNGLRKRLKELMMEFQALRQKMMTEYKETVGRRYFTVTGEYPGEEVIEKIISDGGEEYMGRAIELHGRGMVVEMVVEIKDRYDGAKEVEKSLLELHRLFMDMAVMVEVQGEKMDDIEHHVLSAGQYVSDGTKSLKTAKEYQRSSRKCMFLGLILLLVIVLAIVIGMTTS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2571135 2572070 - Conep10aG0056900.1 Cone10ag0552 446350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0552 311 Pfam Syntaxin 46 252 IPR006011 GO:0016020(InterPro)
Cone10ag0552 311 Gene3D - 39 172 - -
Cone10ag0552 311 SMART tSNARE_6 212 279 IPR000727 -
Cone10ag0552 311 Coils Coil 143 163 - -
Cone10ag0552 311 FunFam Syntaxin 132 210 310 - -
Cone10ag0552 311 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 41 175 - -
Cone10ag0552 311 SUPERFAMILY t-snare proteins 41 272 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone10ag0552 311 SMART SynN_4 39 169 IPR006011 GO:0016020(InterPro)
Cone10ag0552 311 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
Cone10ag0552 311 PANTHER SYNTAXIN 47 297 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone10ag0552 311 CDD SynN 47 199 IPR006011 GO:0016020(InterPro)
Cone10ag0552 311 Gene3D - 214 310 - -
Cone10ag0552 311 ProSitePatterns Syntaxin / epimorphin family signature. 223 263 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone10ag0552 311 Coils Coil 105 125 - -
Cone10ag0552 311 Pfam SNARE domain 254 305 IPR000727 -
Cone10ag0552 311 CDD SNARE_syntaxin1-like 217 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0552 Cone-Chr10:2571135 Cone1ag0131 Cone-Chr1:738960 1.54E-67 dispersed
Cone10ag0552 Cone-Chr10:2571135 Cone3ag0576 Cone-Chr3:2843996 2.20E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0552 K08486 - csv:101220775 411.764