Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0558 ATGGTTTCAGAGTGTGGACCGAGCTGTAGATGTGGATTGGAATGCAGGAAAAGACTGTCGCAGAAAGGCACTTCGGTGAGGTTGAAAATTGTGAGAGATAGGAAGAAAGGCTGGAGCTTGTATGCTGATCAATTCTTGCCTTCCGGTCAGTTCATATGCGAGTATGCTGGTGAACTTTTGACTTCTGAAGAAGCGAGGAAGCGGCAACAAGCCTACGACGAACTTTCGTCGAGCGGGGCCCGTTTTTCTTCTGCTCTTTTAGTCGTGAGGCAGCACCTTCTTTCTGGAAAGGCCTGTTTAAGGATGAACATTGATGCAACAAGAATCGGAAACGTAGCAAGGTTCATTAATCATTCTTGCGACGGAGGGAATTTGGTCTCGAAACTGGTGAGAAGTTCTGGATCTCTTCTGCCTCGTCTTTGCATCTTTGCTTCAAAAAGCATAGAGAGAAATGAAGAGCTCACGTTTAGCTATGGTGATGTGAGGCTAGGTCCAAAGGGTCTGCAGTGCTTCTGTGGCTGCTCTTCCTGTATCGGAGTGTTACCTTCTGAATATACTTGA 561 46.52 MVSECGPSCRCGLECRKRLSQKGTSVRLKIVRDRKKGWSLYADQFLPSGQFICEYAGELLTSEEARKRQQAYDELSSSGARFSSALLVVRQHLLSGKACLRMNIDATRIGNVARFINHSCDGGNLVSKLVRSSGSLLPRLCIFASKSIERNEELTFSYGDVRLGPKGLQCFCGCSSCIGVLPSEYT 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2589451 2590356 + Conep10aG0057500.1 Cone10ag0558 446356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0558 186 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 181 IPR051357 GO:0003690(PANTHER)|GO:0016571(PANTHER)|GO:0042054(PANTHER)
Cone10ag0558 186 SMART set_7 26 165 IPR001214 GO:0005515(InterPro)
Cone10ag0558 186 SUPERFAMILY SET domain 1 179 IPR046341 -
Cone10ag0558 186 ProSiteProfiles Post-SET domain profile. 166 182 IPR003616 -
Cone10ag0558 186 ProSiteProfiles SET domain profile. 26 159 IPR001214 GO:0005515(InterPro)
Cone10ag0558 186 Gene3D SET domain 1 185 IPR046341 -
Cone10ag0558 186 Pfam SET domain 37 159 IPR001214 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0558 K11433 - - vvi:100260473 292.737
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0558 Cone-Chr10:2589451 Cone11ag0011 Cone-Chr11:79953 1.38E-24 dispersed
Cone10ag0558 Cone-Chr10:2589451 Cone3ag0581 Cone-Chr3:2859308 2.01E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012747 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 1 0 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44197 PF13639 zf-RING_2 1.30E-08 CL0229 Cone TR