Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0559 ATGTATCATCCTCATCATCAGCAACATAATCCCGGCCAGCATGATGGAATTATCAAGAGCAATAATGGTAATATTAACATGCGGTGTGCGTCGTCACGGCCGGATTCGGTACATGGTAATTTGTTTCTTCCTGGACAGATAGGAAGGAACGATTCGGGACTTGTTCTCTCAACAGATGCCAAGCCCAGGCTCAAATGGACTTCTGATCTTCACCACCGTTTTATAGAGGCAGTCAATCAGCTGGGAGGACCTGATAAGGCAACTCCTAAAACGGTGATGAAGATTATGGGCATTCCTGGACTTACTTTATATCATTTGAAAAGTCATCTTCAAAAGTATAGGCTCAGCAAGAATCTGCATGGACAAGCAACTAATAGCTCATGTGGAACCCCTAAATTTGTAATGGCCGGTGAGAGATTACCTGATCATCAAGCAAATGATCAAACTTGTATCAATAATCTAAACACTATTGCACCCCACATGAACAAAAGCTTGCATATAAGTGAAGCACTAGAGATGCAAATAGAAGTTCAAAGAAGGCTACATGAACAACTTGAGGTACAACGACACTTGCAGCTCCGTATAGAAGCACAAGGCAAGTACCTACAAGCAGTGCTAGAAAAGGCTCAAGAAACCCTTGGAAAACAAGGCTCATCATCATCAGGTGCGGTAGTATTGGGATCACTTGAAGCTACAAAATTACAACTCTCCGAATTAGTCTCGAAAGTATCCAATCAGTGCCTCCAATTAGGCAGCACCGCTAATACTGGTATCACCACTTCTGCTGCTTTTCCGGATCATCATCATCATCTGAAACAAATCCAAGCCGGCTTTAACTTTTCGCATGAGGATGGCTCGGGGGATAGCTGCCTCACCTCTTGCGAGGAGAGACGGATCATGAGTAGTGAATTATCGATAAATATTAATAATAACGGAGGGCTTGTCCAGACTGGAGGAGATAGGGAAGGGATCAAGGTTATGAGCAAGAACAGGGTAGATACTGATCATCGGCAAGGAAGATTGACAAGATTGGAAAATGATGATCAAAACTCAATGCTTCGAATGCCTTATTTTGCTGCGACAGCTTTGGACTTGAATGTTGATGATGAGAACAATAACATCGATATCGGTTCTAATTCCGGTTGCAACCAATTCGACTTGAATGGGATCGGTTGGAGCTAA 1182 42.98 MYHPHHQQHNPGQHDGIIKSNNGNINMRCASSRPDSVHGNLFLPGQIGRNDSGLVLSTDAKPRLKWTSDLHHRFIEAVNQLGGPDKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQATNSSCGTPKFVMAGERLPDHQANDQTCINNLNTIAPHMNKSLHISEALEMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGKQGSSSSGAVVLGSLEATKLQLSELVSKVSNQCLQLGSTANTGITTSAAFPDHHHHLKQIQAGFNFSHEDGSGDSCLTSCEERRIMSSELSININNNGGLVQTGGDREGIKVMSKNRVDTDHRQGRLTRLENDDQNSMLRMPYFAATALDLNVDDENNNIDIGSNSGCNQFDLNGIGWS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2597083 2600004 + Conep10aG0057600.1 Cone10ag0559 446357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0559 393 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
Cone10ag0559 393 FunFam Myb family transcription factor 60 118 - -
Cone10ag0559 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 366 IPR046955 GO:0003700(InterPro)
Cone10ag0559 393 Pfam MYB-CC type transfactor, LHEQLE motif 166 212 IPR025756 -
Cone10ag0559 393 Coils Coil 168 188 - -
Cone10ag0559 393 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 116 IPR006447 GO:0003677(InterPro)
Cone10ag0559 393 Pfam Myb-like DNA-binding domain 63 114 IPR001005 -
Cone10ag0559 393 Gene3D - 60 118 - -
Cone10ag0559 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 118 IPR017930 -
Cone10ag0559 393 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0559 Cone-Chr10:2597083 Cone9ag0583 Cone-Chr9:2748275 5.78E-47 dispersed
Cone10ag0559 Cone-Chr10:2597083 Cone3ag0582 Cone-Chr3:2867259 5.01E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44198 PF07714 PK_Tyr_Ser-Thr 2.30E-24 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0559 - - - 0.0